EY659966

Overview
NameEY659966
Unique NameEY659966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659966_ssr810 microsatellite EY659966_ssr810:810..821. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659966 vs. ExPASy Swiss-Prot
Match: TSYL1_BOVIN (Testis-specific Y-encoded-like protein 1 OS=Bos taurus GN=TSPYL1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 35/134 (26.12%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  475 KEHTEESNGLNNGSPAHKR-------LKKDNVVENGEEASVDYDFDKETQKTLEEIDICQNEIDSLNEKASEEILKVEQKYNKLRKPFFEKRNKLIEKIPNFWVSAFVNHTQIRNLLXLEEEDCVPHFKSIEVE 855
            KE  +E  G+  G    +R       + ++ VVE      +  D        +  ++  Q E+DS+N +A     ++E K+ ++R+ + E+RN +I+ IP FWV+AF NH Q+  ++  ++ + + +  ++EV+
Sbjct:  178 KEGAKEEEGVEQGMEVEERPVGEEIEMVENRVVEEAGHRPLRMDL------RMNPLEAIQLELDSVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWVTAFRNHPQLSPMIRGQDAEMLRYITNLEVK 305          
The following BLAST results are available for this feature:
BLAST of EY659966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TSYL1_BOVIN9.739e-1126.12Testis-specific Y-encoded-like protein 1 OS=Bos ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659966 ID=EY659966; Name=EY659966; organism=Citrus sinensis; type=EST; length=899bp
AAATGGTAGCCTNAGGTANNGGTNNGGATTTTTCATAGAGGGGGNGNNNG
NAAAATTTTACAAAAAAGGATTNNGTTTTCTATTTCATTTTTAGATCTTT
TTCTTTCTTTATTATCCCAGTTTTGGTCAGTCAAAAAAAAAAATTAATTT
AAATTTATTTTGTTTATTAAGTGAGTTATATTTTAATTAATAACTTTTTA
TTTAAAACTTGCTGCTATCTTCTGTCACTATAGTTTAATATTGTTTTATT
TTCATTCCCCTACTTTGTTTTTTGTCGTTTTATCAGTTTTTTTTATTTTA
TATAATCTTATATATTCATGCTTTTGTTAATATTAAGTACAAAAATTTGT
TCTTTAAATTTTTGTTAAAATTTCTCAATTTCTAAACTTTCTTTAAGATT
AATTTTAAACAAATTTAAGTTTTGAAATTAATTTATTTTTTTAACAAATT
TACTTCTTAATAATGTCTGATGTTAAAGAACATACTGAAGAATCAAATGG
TCTTAATAATGGAAGTCCAGCTCACAAAAGGTTAAAAAAAGATAACGTCG
TTGAAAACGGTGAAGAAGCAAGTGTTGATTACGATTTTGATAAAGAAACT
CAAAAAACTTTAGAAGAGATTGACATTTGTCAAAATGAAATTGATTCTTT
AAATGAAAAAGCATCTGAAGAAATTTTAAAAGTTGAACAGAAGTATAATA
AATTAAGAAAACCATTTTTCGAAAAAAGAAATAAATTAATTGAAAAAATT
CCTAACTTTTGGGTTTCAGCTTTTGTTAATCATACTCAAATTAGAAATTT
ATTGANGTTAGAAGAAGAAGATTGTGTACCACATTTTAAGTCAATTGAAG
TAGAGAATTCGAAGACATTAAATCTGGTTATAGAATAAATTTTGTTTTG
back to top