EY659707

Overview
NameEY659707
Unique NameEY659707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8073 contig Csv1_Contig8073:1532..2471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 79/276 (28.62%), Postives = 134/276 (48.55%), Query Frame = 1
Query:  121 VHFQGEEGIDAGGL----TREWYQLLSRVIFDKGALLFTT------VG-NESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            V   GE   DAGG+      E  Q L   I D   LL  +      VG N   F  NP++    EHL  FKF+G ++G A+   + LD+H     +K +  V +T  D+E +D  Y + L  +L  + S + + +F      +  +  + A      +IPGG +I +T  N+ +YV+   E+RL    R Q+ A  EG + ++P  L+S+   ++LE ++  +P+I ++ ++    Y        ++Q  W  ++ FS EE+   +  V+G S+ P
Sbjct: 4514 VKLVGEGADDAGGVFDDTITEMCQELETGIVD---LLIPSPNATAEVGYNRDRFLFNPSACLD-EHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQTLNSILHIEDSGITEESFHEMIPLDSFV-GQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYRLHEMDR-QVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVRYREVDEQHQLVQWFWHTLEEFSNEERVLFMRFVSGRSRLP 4783          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: HERC2_MOUSE (Probable E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.494e-20
Identity = 57/215 (26.51%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  283 HLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDIS----DVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            H S F+F+G ++G A+  G  L ++     +K + G+ +T  D+  +D D+   L ++ +N+ +    + + L F++ +          A   D +L    ++  +T +N+ +YV L   +RL      Q+ A  EG   ++P  L+S+F   ELE ++   PDI L  +++   Y G   ++ ++Q  WEV++ FS  E++  L  V G ++ P
Sbjct: 4531 HCSMFRFLGVLLGIAIRTGSPLSLNLAEPVWKQLAGMSLTIADLSEVDKDFIPGLMYIRDNEATSEEFEAMSLPFTVPS----------ASGQDIQL--SSKHTHITLDNRAEYVRLAINYRLHE-FDEQVAAVREGMARVVPVPLLSLFTGYELETMVCGSPDIPLHLLKSVATYKGIEPSASLVQWFWEVMESFSNTERSLFLRFVWGRTRLP 4732          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: HERC2_HUMAN (Probable E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.494e-20
Identity = 58/215 (26.98%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  283 HLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDIS----DVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            H S F+F+G ++G A+  G  L ++     +K + G+ +T  D+  +D D+   L ++ +N+ +    + + L F++ +          A   D +L    ++  +T +N+ +YV L   +RL      Q+ A  EG   ++P  L+S+F   ELE ++   PDI L  +++   Y G   ++ +IQ  WEV++ FS  E++  L  V G ++ P
Sbjct: 4529 HSSMFRFLGVLLGIAIRTGSPLSLNLAEPVWKQLAGMSLTIADLSEVDKDFIPGLMYIRDNEATSEEFEAMSLPFTVPS----------ASGQDIQL--SSKHTHITLDNRAEYVRLAINYRLHE-FDEQVAAVREGMARVVPVPLLSLFTGYELETMVCGSPDIPLHLLKSVATYKGIEPSASLIQWFWEVMESFSNTERSLFLRFVWGRTRLP 4730          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: UBR5_RAT (E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rattus norvegicus GN=Ubr5 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.372e-20
Identity = 65/250 (26.00%), Postives = 119/250 (47.60%), Query Frame = 1
Query:  202 DKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWML-------ENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSA--ASPVIQ---CLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            D  A LF   G    + P P    +   L+ F+ +GR++G  L   +L  +   R   K +LG KV +HD    DP  +++L+ ++        + +   +DL F++D  +E+       QV   ELIP G NI VT +N ++YV   AEHR+       ++A  +G  +++P   +     ++  LL++   ++++  + + T ++  S   A  ++Q     W +V+R S  E+  L++  T     P
Sbjct:  620 DDNAPLFYQPGKRGFYTPRPGKNTEAR-LNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEE----GGGQV---ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP 861          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: UBR5_MOUSE (E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.599e-19
Identity = 65/250 (26.00%), Postives = 119/250 (47.60%), Query Frame = 1
Query:  202 DKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWML-------ENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSA--ASPVIQ---CLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            D  A LF   G    + P P    +   L+ F+ +GR++G  L   +L  +   R   K +LG KV +HD    DP  +++L+ ++        + +   +DL F+ID  +E+       QV   ELIP G NI VT +N ++YV   AEHR+       ++A  +G  +++P   +     ++  LL++   ++++  + + T ++  S   A  ++Q     W +V++ S  E+  L++  T     P
Sbjct: 2492 DDNAPLFYQPGKRGFYTPRPGKNTEAR-LNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLCKEE----GGGQV---ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLP 2733          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: UBR5_HUMAN (E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.599e-19
Identity = 65/250 (26.00%), Postives = 119/250 (47.60%), Query Frame = 1
Query:  202 DKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWML-------ENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSA--ASPVIQ---CLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            D  A LF   G    + P P    +   L+ F+ +GR++G  L   +L  +   R   K +LG KV +HD    DP  +++L+ ++        + +   +DL F+ID  +E+       QV   ELIP G NI VT +N ++YV   AEHR+       ++A  +G  +++P   +     ++  LL++   ++++  + + T ++  S   A  ++Q     W +V++ S  E+  L++  T     P
Sbjct: 2499 DDNAPLFYQPGKRGFYTPRPGKNTEAR-LNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLCKEE----GGGQV---ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLP 2740          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: HYD_DROME (E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.599e-19
Identity = 62/250 (24.80%), Postives = 121/250 (48.40%), Query Frame = 1
Query:  202 DKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLEN-------DISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASP-----VIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            D    LF + G    + P        E ++ F+ +GR++G  L   +LL +   R   K+ILG K+ +HD+   DP  +++ + +++N       +  + ++L F ID  +E+          + ELIPGGR++ VT  N  +YV    E+RL  +    + A  +G  +++P   +     ++L LL++ + DI++  + + T ++  S+  P       +  W +V++ +  E+  L++  TG    P
Sbjct: 2585 DDNEPLFYSPGKRGFYTPRQGFA-SFERINAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILGRKIKFHDLAFFDPALYESFRQIIQNAQTKEGEETINRMELCFVIDLMKEE-------GCGNRELIPGGRDVAVTSSNIFEYVRRYTEYRLIKSQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPDKLLKFKKWFWSIVEKMNIMERQDLVYFWTGSPALP 2826          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.146e-17
Identity = 86/347 (24.78%), Postives = 149/347 (42.94%), Query Frame = 1
Query:   25 KTRVRCKNSXILEDSYNQLRMRSTQDLNPRLTVHFQGEEGIDAGGLTREWYQLLSRVI---------FDKGALLFTTVGNESTFQPNPNSVYQT--------------------------EHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNL---------KWMLE----NDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDI-DLDDMRANTEYS-GYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            + +VR   + IL+ +   + M S+Q     L V + GE G   G  T E+Y LLS  +            G  +   +G +      P++  +                           + + YF+ +GRV+ KAL DG+LLDV  + +FYK ILG ++  HDI   D +  K L         K  LE    ++ S + DL       E+  + +      +Y L  G   + +T  N  +Y+ LV +  +   +  QI AF  GF ++     + IF   EL+ L+    ++ +++ +  + ++  GY+A SP I  L E++   + +++      VTG  + P
Sbjct: 1470 RQKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGP-TLEFYTLLSHDLQKASLGMWRSSSGDKVSMQIGRDEIEDGKPSAANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDIT--NLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLP 1811          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: HECD3_MOUSE (Probable E3 ubiquitin-protein ligase HECTD3 OS=Mus musculus GN=Hectd3 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.654e-16
Identity = 59/231 (25.54%), Postives = 115/231 (49.78%), Query Frame = 1
Query:  247 FQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYH-DIEAIDPDYFKNLKWMLENDISDV-----LDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCPWR 921
            + PNP+        + ++++G+++G AL   + L +      +K + G +V++  D  A+D    K L+ M   D          +LTF+    +++++          ELIPGG  I V  E++ +++ LV + RL  + + Q+ A   G  +++P  ++ +   QELE  +   P++ +D +R  T +  +  +   +Q  WE +  F+ E+++R L  VTG S+ P R
Sbjct:  586 YVPNPSC----RDFAKYEWIGQLMGAALRGKEFLVLALPGFVWKQLSGEEVSWSKDFPAVDSVLVKLLEVMEGVDKETFEFKFGKELTFTTVLSDQQVV----------ELIPGGTGIVVEYEDRSRFIQLVRKARLEES-KEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFEDFEPSDTRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPAR 801          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: SPKUL_DICDI (Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase OS=Dictyostelium discoideum GN=DDB_G0276527 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.072e-15
Identity = 82/343 (23.91%), Postives = 130/343 (37.90%), Query Frame = 1
Query:  112 RLTVHFQGEEGIDAGGLTREW----------------------YQLLSRVIFDKGALLFTTVGNESTF---------------------------------------------------QPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLEND-ISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIP-GELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            RL V FQGE+G+D GGL+ E                       Y +    +F K   LF   G ES F                                                   + NP  + + E  + FK +G++  K++ DG+ +   F  SF+K++LGVKV   D+E  DP   ++ K +L  D I + L  TF                     LI GG +I VT+ NK +++    E  L    + ++ AF  GF  +       ++F+  EL+LL+     +D   ++ N ++ G+   S   +     V   +++E    L  VTG    P
Sbjct: 1508 RLEVSFQGEKGLDLGGLSSEMYSLLFSDNQIIDNSNNSNNSVSYSIPKNSLFSKKFNLFENSGTESPFYLLNSNDLFNNNNNNNEENNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEENPLLILKNE-FTIFKILGKIFLKSIIDGKPIPDCFPTSFFKYLLGVKVNLRDLEIYDPQLAQSFKKVLVLDNIEEYLSTTFE-------------------GLIEGGESIPVTDLNKEEFIQRNIERVLVGCRQSKLEAFKSGFMSIDSLNAHFALFSPTELQLLMCGNTLVDSSVLQKNFKFIGFPDTSSTPKDFRRAVDEMNQDEIRLFLRFVTGMVALP 1830          
The following BLAST results are available for this feature:
BLAST of EY659707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HERC1_HUMAN5.870e-2228.62Probable E3 ubiquitin-protein ligase HERC1 OS=Homo... [more]
HERC2_MOUSE5.494e-2026.51Probable E3 ubiquitin-protein ligase HERC2 OS=Mus ... [more]
HERC2_HUMAN5.494e-2026.98Probable E3 ubiquitin-protein ligase HERC2 OS=Homo... [more]
UBR5_RAT9.372e-2026.00E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rat... [more]
UBR5_MOUSE1.599e-1926.00E3 ubiquitin-protein ligase UBR5 OS=Mus musculus G... [more]
UBR5_HUMAN1.599e-1926.00E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens G... [more]
HYD_DROME1.599e-1924.80E3 ubiquitin-protein ligase hyd OS=Drosophila mela... [more]
UPL3_ARATH1.146e-1724.78E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
HECD3_MOUSE1.654e-1625.54Probable E3 ubiquitin-protein ligase HECTD3 OS=Mus... [more]
SPKUL_DICDI1.072e-1523.91Bifunctional serine/threonine-protein kinase/NEDD4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659707 ID=EY659707; Name=EY659707; organism=Citrus sinensis; type=EST; length=940bp
TGCGGACCGGTCCGGAATTCTTCAAAAACACGCGTCCGCTGTAAGAATAG
CTNAATTCTTGAAGATTCATACAACCAACTGCGCATGCGATCAACGCAAG
ATTTGAACCCAAGGTTGACTGTTCACTTTCAAGGAGAGGAAGGCATTGAT
GCCGGTGGCCTTACAAGGGAGTGGTACCAATTGCTGTCAAGGGTTATTTT
TGACAAGGGAGCCCTACTTTTCACAACAGTGGGCAATGAATCAACATTCC
AGCCCAACCCCAACTCTGTTTACCAAACTGAACATCTTTCATATTTCAAG
TTTGTTGGGCGAGTTGTTGGAAAAGCTCTTTTTGACGGGCAACTGTTGGA
TGTCCATTTTACTCGATCTTTCTACAAGCACATCCTGGGGGTTAAAGTTA
CTTATCATGACATTGAAGCTATTGATCCAGATTACTTCAAAAACCTGAAG
TGGATGCTTGAGAATGACATCAGTGATGTTCTTGACCTCACTTTTAGTAT
TGATGCTGATGAGGAGAAGCTGATTTTGTATGAAAGGGCGCAGGTAACCG
ACTATGAGCTAATTCCTGGTGGACGGAATATTAAAGTTACTGAGGAGAAT
AAGCACCAGTATGTGGATTTAGTTGCGGAGCATCGTTTGACGACTGCTAT
TCGGCCTCAAATAAATGCTTTTCTGGAGGGATTTACCGAACTAATTCCTG
GGGAGTTGATATCTATCTTCAATGACCAGGAATTAGAATTATTGATTAGT
GCGCTTCCCGATATTGATTTGGATGACATGAGGGCAAATACGGAATATTC
TGGATATAGTGCTGCATCTCCTGTTATCCAGTGTCTTTGGGAAGTTGTTC
AACGCTTCAGCAAGGAGGAAAAGGCTCGTCTTCTGCATCTTGTGACTGGC
CCCTCAAAGTGCCCTTGGAGGTTTCCTGCACTTCAAGAAT
back to top