EY659707

Overview
NameEY659707
Unique NameEY659707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8073 contig Csv1_Contig8073:1532..2471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: HECD3_HUMAN (Probable E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.072e-15
Identity = 58/231 (25.11%), Postives = 114/231 (49.35%), Query Frame = 1
Query:  247 FQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYH-DIEAIDPDYFKNLKWMLENDISDV-----LDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCPWR 921
            + PNP+        + ++++G+++G AL   + L +      +K + G +V++  D  A+D    K L+ M   D          +LTF+    +++++          ELIPGG  I V   ++ +++ LV + RL  + + Q+ A   G  +++P  ++ +   QELE  +   P++ +D +R  T +  +  +   +Q  WE +  F+ E+++R L  VTG S+ P R
Sbjct:  586 YVPNPSC----RDFAKYEWIGQLMGAALRGKEFLVLALPGFVWKQLSGEEVSWSKDFPAVDSVLVKLLEVMEGMDKETFEFKFGKELTFTTVLSDQQVV----------ELIPGGAGIVVGYGDRSRFIQLVQKARLEES-KEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFEDFEPSDSRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPAR 801          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: HERC2_DROME (Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 56/225 (24.89%), Postives = 108/225 (48.00%), Query Frame = 1
Query:  253 PNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLEND----ISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            P  +SV Q   ++ F+F+G ++G A+  G  L ++     ++ + G  +   D+  +D DY   L  +   D    +   L+L FS  +               +E+    R   ++  N+ +YV L    RL      Q+ A  +G +++IP  L+S+F+  EL+ ++   PDI L  +++   Y G+  +S ++   WEV++ F+ +E++  L  V G ++ P
Sbjct: 4611 PTLSSVLQ---MNMFRFLGVLMGIAVRTGSPLSINLAEPVWRQLTGEVLRPTDLTEVDRDYVAGLLCIRNMDDDPKLFTALELPFSTSS------------ARGHEVPLSTRYTHISPRNRAEYVRLALGFRLHE-FDEQVKAVRDGMSKVIPVPLLSLFSAAELQAMVCGSPDIPLGLLKSVATYKGFDPSSALVTWFWEVMEEFTNQERSLFLRFVWGRTRLP 4819          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.120e-15
Identity = 78/309 (25.24%), Postives = 132/309 (42.72%), Query Frame = 1
Query:  115 LTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLF--------------TTVGNESTFQ-PNPNSVYQTEH--LSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHI------------LGVKVTYHDIEAIDPDYFKNLKWMLENDISDV----LDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTE---------LIPGELISIFNDQELELLISALPDIDLDDMRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            L + +Q E G   G  T E+Y ++S+    K   ++              TT    +T   P P + +      +  F ++G  V ++L D ++LD  F++ F++ +              V+     IE +DP   K+LK+++ N   ++    L LTF++  ++            D ELIPGG N  +   N  +Y+  V +  L   I  Q+ AF+EGF++         L P EL+ IF   E +  ++ L          N E+ GY+  S +I     ++  F K E+   L  +TG  K P
Sbjct: 1128 LEIEYQEEAGTGLGP-TLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEPLNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFFELLHRMSTPNVTTVPSDVETCLLMIELVDPLLAKSLKYIVANKDDNMTLESLSLTFTVPGND------------DIELIPGGCNKSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATL------YTNLNAEH-GYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLP 1416          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 62/230 (26.96%), Postives = 107/230 (46.52%), Query Frame = 1
Query:  295 FKFVGRVVGKALFDGQLLDVHFTRSFYKHILG--VKVTYHDIEAIDPDYFKNL---------KWMLENDISDVLD--------LTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDDMRANTEY----SGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            F+F+G+++ KA+ D +L+D+     FYK +L     +T HD+  IDP   +++         K  LE D S   +        LT +  + E+  + +      + EL  GG++I VT  N  +Y+ LV    L   +  Q ++F +GF  + P   +  F  +EL+ L+      D  D +   E      GY+  S  ++ L+E++  F  E++   L  VTG  + P
Sbjct: 1697 FRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCG-SKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLP 1925          
BLAST of EY659707 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.602e-11
Identity = 63/263 (23.95%), Postives = 109/263 (41.44%), Query Frame = 1
Query:  220 FTTVGNESTF---------QPNPNSVYQTEHL------------------SYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDISDVLDLTFSIDADEEKLIL-YERAQVTDYELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDQELELLISALPDIDLDD---MRANTEYSGYSAASPVIQCLWEVVQRFSKEEKARLLHLVTGPSKCP 915
            +T+V  E T          QPN   VYQ   L                  S F  +G+ V ++++D +++ + F   F+     + +T   +  +D     +L++ LE  I          D   E L L +        ELIP G +  VT  N   Y++ V ++ +   ++ Q+ AF  GF+ + P   + +  + EL  L   + D D      M++     GY+  SP IQ L  ++ + + +E+   L  +TG  K P
Sbjct: 1322 YTSVSKEFTLNSLDIWRNDQPNSKFVYQASGLFPSPIPLLGSSPENERKISLFFALGQFVARSIYDSRIISIQFNPLFFAR--NIPLTISSVAKVDKGLANSLRY-LEKLIPGKNPTNAETDIKLEDLHLDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTV-DEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLP 1580          
The following BLAST results are available for this feature:
BLAST of EY659707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HECD3_HUMAN1.072e-1525.11Probable E3 ubiquitin-protein ligase HECTD3 OS=Hom... [more]
HERC2_DROME1.829e-1524.89Probable E3 ubiquitin-protein ligase HERC2 OS=Dros... [more]
UFD4_YEAST3.120e-1525.24Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
TRIPC_HUMAN6.506e-1326.96Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.602e-1123.95Probable ubiquitin fusion degradation protein C12B... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659707 ID=EY659707; Name=EY659707; organism=Citrus sinensis; type=EST; length=940bp
TGCGGACCGGTCCGGAATTCTTCAAAAACACGCGTCCGCTGTAAGAATAG
CTNAATTCTTGAAGATTCATACAACCAACTGCGCATGCGATCAACGCAAG
ATTTGAACCCAAGGTTGACTGTTCACTTTCAAGGAGAGGAAGGCATTGAT
GCCGGTGGCCTTACAAGGGAGTGGTACCAATTGCTGTCAAGGGTTATTTT
TGACAAGGGAGCCCTACTTTTCACAACAGTGGGCAATGAATCAACATTCC
AGCCCAACCCCAACTCTGTTTACCAAACTGAACATCTTTCATATTTCAAG
TTTGTTGGGCGAGTTGTTGGAAAAGCTCTTTTTGACGGGCAACTGTTGGA
TGTCCATTTTACTCGATCTTTCTACAAGCACATCCTGGGGGTTAAAGTTA
CTTATCATGACATTGAAGCTATTGATCCAGATTACTTCAAAAACCTGAAG
TGGATGCTTGAGAATGACATCAGTGATGTTCTTGACCTCACTTTTAGTAT
TGATGCTGATGAGGAGAAGCTGATTTTGTATGAAAGGGCGCAGGTAACCG
ACTATGAGCTAATTCCTGGTGGACGGAATATTAAAGTTACTGAGGAGAAT
AAGCACCAGTATGTGGATTTAGTTGCGGAGCATCGTTTGACGACTGCTAT
TCGGCCTCAAATAAATGCTTTTCTGGAGGGATTTACCGAACTAATTCCTG
GGGAGTTGATATCTATCTTCAATGACCAGGAATTAGAATTATTGATTAGT
GCGCTTCCCGATATTGATTTGGATGACATGAGGGCAAATACGGAATATTC
TGGATATAGTGCTGCATCTCCTGTTATCCAGTGTCTTTGGGAAGTTGTTC
AACGCTTCAGCAAGGAGGAAAAGGCTCGTCTTCTGCATCTTGTGACTGGC
CCCTCAAAGTGCCCTTGGAGGTTTCCTGCACTTCAAGAAT
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