EY659701

Overview
NameEY659701
Unique NameEY659701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659701 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.300e-11
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 3
Query:   45 LKYMKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 218
            + Y  E ++  + TEC +CLS F   E V+ L  C H FH  CID WL SHS+CP CR
Sbjct:  116 VSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173          
BLAST of EY659701 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 3
Query:   81 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 218
            G EC VCL+ F   EV+R L  CKH+FH  C+D WL +HS CP+CR
Sbjct:  143 GLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 188          
BLAST of EY659701 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 3
Query:   87 ECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 218
            EC VCLS F D E  R +  CKH+FH  CIDMW  SHS+CP+CR
Sbjct:   75 ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCR 118          
BLAST of EY659701 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 3
Query:   75 DVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 218
            D  TEC +C++ F++GE +R L  C H+FH +CID WL S S+CP CR
Sbjct:  108 DSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCR 155          
BLAST of EY659701 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 3
Query:   54 MKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 218
            +K   +   G EC VCL  F D E +R +  C H FHA C+D+WL  HS CP+CR
Sbjct:  123 VKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCR 177          
BLAST of EY659701 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 3
Query:   81 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 218
            G  CP+CLS +A  E VR +  C H FH  CID WLK HS+CP+CR
Sbjct:  250 GIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCR 295          
The following BLAST results are available for this feature:
BLAST of EY659701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ATL1L_ARATH3.300e-1148.28RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL5C_ARATH4.309e-1156.52RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
ATL4G_ARATH4.309e-1161.36RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]
ATL4L_ARATH7.351e-1152.08RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]
ATL2G_ARATH7.351e-1147.27RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL1E_ARATH7.351e-1156.52RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659701 ID=EY659701; Name=EY659701; organism=Citrus sinensis; type=EST; length=650bp
CCACGCGTCCGAAAGCGAACTACCGCACGGAGATGGCATCGGGGCTCAAG
TATATGAAGGAGGCCCATGTTAAGGACGTGGGCACCGAGTGTCCCGTTTG
CTTGTCTGCGTTCGCTGACGGCGAAGTGGTTCGGCAGCTGAGCGCGTGTA
AACACTCTTTCCATGCTTCTTGCATCGACATGTGGTTGAAATCTCACTCC
AATTGTCCGATCTGTCGCGCTCCCGTTCCCGCCAAGCCCCCTAATAATAA
CAACGCCGCCCCGCCGCGAGAAATCACACGGTTTACATGGCCCATCCTGC
GGCCACTAAGCGTCCAAGTGGCTGCATCGTTAGGTGGAAGATGAGACGCT
GACTTCACTATTCAGTTAGGTATCAACATATCATTATTGGCCGGCTACTT
GGGGTAATGATATACCGTAAATGAATTTGAGTCTTTTGGCTGATGACGAA
AGTGAAAATGAGAAACTTTGATGATGAATTGATGATGAGTGGTGCCTGTC
AATTACTTGACTGCTTGTGCTTTTGCTCACCAGCTTTCATTTGTTCATTA
CTTTGTTTTCTTTGCATTTTGCGCTTCCATTTTGGACTTCTTGTCTGCTT
CTTCAGATATATAAGGGATCCTGACTTGAAAAAAAAAAAAAAAAAAAAAA
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