EY659665

Overview
NameEY659665
Unique NameEY659665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7492 contig Csv1_Contig7492:1..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659665 vs. ExPASy Swiss-Prot
Match: CNNM4_HUMAN (Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.619e-13
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 2 
Query:    2 PIGKILDAVLGHH-DALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLN*VKSLLTVRAETETPVSAVSIRRMPRVPADMPLYD-----ILNEFQKGSSHMA 472
            PI K+LD  LG     ++ R +L  ++ +         +L  +E  +I GAL+L  KT E+ MT ++  F +  ++ LD+  + +I+  G++R+P++     NI+ +L   VK L  V  +  TP+   +I R    P     +D     +L EF+KG SH+A
Sbjct:  319 PISKLLDFFLGQEIRTVYNREKLMEMLKVTEPY----NDLVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILY--VKDLAFVDPDDCTPLK--TITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLA 473
The following BLAST results are available for this feature:
BLAST of EY659665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CNNM4_HUMAN4.619e-1330.06Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659665 ID=EY659665; Name=EY659665; organism=Citrus sinensis; type=EST; length=892bp
TCCTATTGGAAAGATTCTTGATGCTGTTCTTGGACACCATGATGCTTTGT
TCAGGCGGGCCCAGTTGAAAGCCCTTGTTTCTATCCACAGCCAAGAGGCT
GGCAAGGGAGGTGAACTTACTCATGATGAGACGACTATTATCAGTGGAGC
ACTAGACTTAACTGAAAAGACTGCGGAGGAGGCTATGACGCCCATTGAGT
CAACATTTTCCTTAGATGTCAATTCGAAATTAGACTGGGAAGCAATTGGA
AAAATTCTCGCTCGAGGTCATAGTCGTGTACCTATTTATTCTGGAAATCC
TAAAAACATTATTGGTCTCTTACTGAATTAGGTGAAAAGCCTTCTTACAG
TACGGGCAGAGACAGAAACTCCAGTGAGTGCTGTTTCTATACGGAGAATG
CCAAGGGTTCCAGCAGATATGCCTTTATATGATATCCTCAACGAGTTTCA
AAAGGGTAGCAGTCATATGGCTGCTGTAGTGAAGGTTAAAGGAAAGAGCA
AAAAATCCCAGTCTATCAGCCTGGGAGAGAAATTTGGGGGAAACGGTGTT
TTCTCTGGGAATTCTCAATTAACTACTCCCTTGCTAACCAACGATGTTAC
ATCAGAAACTACTCCCTTGCTAACCAACGATGTTACATCAGAAAGTGTTG
TTGTTGGCATTGACAGAACATCAAGGCCCAACACAAATAACCAATCTCTG
CCACACAGCTTGGTGCTGCTGCAGAAAACTTGCCTTACTCATTANAGGAT
AATTGAGAAGGAGTAGTCATGGNCATCATCACCCTTGAAGATGTTTTTGA
AAGACCTCCTGCAGAGGAAATAGTGNATGAAACTGATGTTTATGTTCGAT
GTCACTAAAAGGAACAAATGGGCTGCTGCGCTGCANCTGCTT
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