EY659647

Overview
NameEY659647
Unique NameEY659647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CGM2_SCHPO (Cyclin mcs2 OS=Schizosaccharomyces pombe GN=mcs2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.587e-21
Identity = 61/175 (34.86%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  102 PKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQ-DHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLK--DLHETAKLEVDKIMLTDAPLLFPPGQLALAALRNSN 617
            P  L +EEE  +  +Y  +L  + SA   P  I++TA+L+FKRFYL  SVME+ PK I  T ++ A K  ++++S E+  K + +   + +L YE  V Q+L++DL V+ P+RPL+GF+ D    CQ    ++ + K  + H+ +K  + + + +D   L  P  +AL A+ ++N
Sbjct:   58 PPTLTVEEELELVNYYSFQLNALSSALSLPTHIRSTAILFFKRFYLINSVMEYSPKIISFTSLFLATKCNDHYISIEQFCKNMPKTTPEEVLEYEFNVCQSLKWDLYVWLPFRPLQGFLLD----CQTVLPKVAVEKFYECHDLSKKFLIETLHSDIYFLHSPSIIALGAIYHTN 228          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNH_ECHMU (Probable cyclin-H OS=Echinococcus multilocularis GN=CYCH PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 53/188 (28.19%), Postives = 92/188 (48.94%), Query Frame = 3
Query:   96 SRPKPLNIEEEQSMRVFYENKLREVCSAFY---FPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQDH----QMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLK-------DLHETAKLE----VDKIMLTDAPLLFPPGQLALAAL 605
            + P  L  EEE  +   Y   ++E+   F     P  +   A  Y KRFYL  SVM++ P+ +MLT +Y ACK  +  +  +     I ++     +++++ E+ + + L++D+ ++ PYRPL G + D+  + + + GE   ++       D+  + K E    + K   TD  L   P Q ALA L
Sbjct:   51 AEPTFLTAEEEFIIVKRYIFAMKELFHQFSDSGLPVDVFGFAATYLKRFYLNNSVMDYFPREMMLTALYLACKAADYPLGLQTFAAHIPRNREHYSEIVVHSELFLMEKLQYDIWIHTPYRPLSGLLVDLLAYRKTQLGEPMTIEAGEVATADMMTSLKKEGYEIIHKWFQTDLCLTHSPSQFALAVL 238          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_XENTR (Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 59/198 (29.80%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   87 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALRNSNKVQR 629
            E+    K L+ EE   +++F+ N ++ +        ++ ATA +YFKRFY ++S+    P  +  TCV+ A K+EE  V +                     K        IL  E  + + ++  LIVY PYRPL  ++ DM        G+  ML  L   A   V+    TD  LL+PP  +ALA L  +  VQ+
Sbjct:   24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ 210          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_XENLA (Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 59/198 (29.80%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   87 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALRNSNKVQR 629
            E+    K L+ EE   +++F+ N ++ +        ++ ATA +YFKRFY ++S+    P  +  TCV+ A K+EE  V +                     K        IL  E  + + ++  LIVY PYRPL  ++ DM        G+  ML  L   A   V+    TD  LL+PP  +ALA L  +  VQ+
Sbjct:   24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ 210          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_HUMAN (Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 59/198 (29.80%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   87 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALRNSNKVQR 629
            E+    K L+ EE   +++F+ N ++ +        ++ ATA +YFKRFY ++S+    P  +  TCV+ A K+EE  V +                     K        IL  E  + + ++  LIVY PYRPL  ++ DM        G+  ML  L   A   V+    TD  LL+PP  +ALA L  +  VQ+
Sbjct:   24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ 210          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_CHICK (Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 59/198 (29.80%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   87 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALRNSNKVQR 629
            E+    K L+ EE   +++F+ N ++ +        ++ ATA +YFKRFY ++S+    P  +  TCV+ A K+EE  V +                     K        IL  E  + + ++  LIVY PYRPL  ++ DM        G+  ML  L   A   V+    TD  LL+PP  +ALA L  +  VQ+
Sbjct:   24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ 210          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_BOVIN (Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 58/198 (29.29%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   87 EKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAE-----------------ELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALRNSNKVQR 629
            E+    K L+ EE   +++F+ N ++ +        ++ ATA +YFKRFY ++S+    P  +  TCV+ A K+EE  V +                     K        +L  E  + + ++  LIVY PYRPL  ++ DM        G+  ML  L   A   V+    TD  LL+PP  +ALA L  +  VQ+
Sbjct:   24 ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYKMNHVLECEFYLLELMDCCLIVYHPYRPLLQYVQDM--------GQEDMLLPL---AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ 210          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_RAT (Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 58/204 (28.43%), Postives = 95/204 (46.57%), Query Frame = 3
Query:   81 NSEKHSRPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEE---------------------NHVSAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALRNSNKVQR 629
            + E+    K L+ EE   +++F+ N ++ +        ++ ATA +YFKRFY ++S+    P  +  TCV+ A K+EE                     ++ S +E    ++     IL  E  + + ++  LIVY PYRPL  ++ DM        G+  +L  L   A   V+    TD  LL+PP  +ALA L  +  VQ+
Sbjct:   17 DKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTSLIAATTSVLKTRFSYASPKEFPYRMNH----ILECEFYLLELMDCCLIVYHPYRPLLQYVQDM--------GQEDVLLPL---AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ 205          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: SSN8_GIBMO (RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella moniliformis GN=SSN8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 42/171 (24.56%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  117 IEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEEN--HV------SAEELGKGISQDHQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAAL 605
            + +++ + +++  +L  +        +  ATA +Y KRFY +  +   +P  ++ T +Y ACKIEE+  H+      + +  G  ++ D   +   E  +   +   LIV+ PYR +    N           EL ++ D  + A+  ++   +TD PLL+PP  +A+ A+
Sbjct:   41 LPQQRRLYIYFNQQLIRLAKRLTIRQQSMATAQVYMKRFYSKVEIRRTNPYLVIATAIYLACKIEESPQHIRLIVTEARQMWGDLVAIDTSKLGECEFFMISEMRSQLIVFQPYRTITALRN-----------ELSLVDDEVQLARSVINDHFMTDLPLLYPPHIIAMVAI 200          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_DROPS (Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 53/183 (28.96%), Postives = 82/183 (44.81%), Query Frame = 3
Query:  111 LNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQD-----------------HQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALR 608
            LN +E Q + +F+ N ++ +        ++ ATA +YFKRFY + S+    P  +  TC+  A K+EE  V +      I Q                     IL  E  + + L+  LIVY PYRPL   + DM    Q+     +++ D            + TD  LL+PP Q+A+A L+
Sbjct:   32 LNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYTQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLTLSWRIVND-----------SLRTDVCLLYPPYQIAIACLQ 203          
The following BLAST results are available for this feature:
BLAST of EY659647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CGM2_SCHPO3.587e-2134.86Cyclin mcs2 OS=Schizosaccharomyces pombe GN=mcs2 P... [more]
CCNH_ECHMU4.696e-1328.19Probable cyclin-H OS=Echinococcus multilocularis G... [more]
CCNC_XENTR6.781e-1229.80Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1[more]
CCNC_XENLA6.781e-1229.80Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1[more]
CCNC_HUMAN6.781e-1229.80Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2[more]
CCNC_CHICK6.781e-1229.80Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1[more]
CCNC_BOVIN6.781e-1229.29Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1[more]
CCNC_RAT1.973e-1128.43Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2[more]
SSN8_GIBMO4.395e-1124.56RNA polymerase II holoenzyme cyclin-like subunit O... [more]
CCNC_DROPS5.741e-1128.96Cyclin-C OS=Drosophila pseudoobscura pseudoobscura... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-E08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659647 ID=EY659647; Name=EY659647; organism=Citrus sinensis; type=EST; length=904bp
ANAATTTGGAACAACACAAATGGAGGTTGATCGCTGATGGGTCATTTTCA
TACCCAGAACCTCAAAATAATGCCAAGGACAACAGTGAAAAGCATTCTCG
TCCGAAACCCCTCAATATCGAAGAGGAACAGTCTATGCGAGTATTTTATG
AGAATAAACTTCGCGAAGTATGCAGTGCATTTTATTTTCCTAATAAAATT
CAGGCAACGGCTCTGTTATACTTCAAAAGGTTCTATCTGCAATGGTCGGT
CATGGAACATCACCCAAAAAATATAATGTTAACTTGTGTATATGCAGCTT
GTAAGATAGAGGAAAATCATGTTTCAGCAGAGGAGCTTGGCAAGGGAATT
TCACAGGATCATCAAATGATTCTCAACTATGAAATGATCGTTTATCAGGC
TTTGGAATTTGATCTTATCGTTTATCCACCATATCGTCCACTTGAAGGAT
TTATTAATGATATGGAAGATTTCTGCCAAGTAAAGAATGGCGAATTGCAG
ATGCTGAAGGATTTGCACGAAACTGCAAAGTTGGAAGTTGACAAAATCAT
GCTTACTGATGCACCACTTCTATTCCCCCCTGGGCAGTTGGCATTGGCTG
CTTTACGAAATTCAAACAAGGTTCAAAGAGTTGTCAACTACGAGAGTTAC
TTGAGCAGCATTCTATCTCGTCAAATTGCTGGGCACATCATTTCAGACCT
TACTNGAAATTTAGACACCATAGATTCCTGGGGGTATGAATATAAGTNCC
CCTCCAGAAAGGGATATGAGCACATCAACAGAAAAACTGAAATCTGNTGG
GGGCCATGGCTCACATGACGTGAGTAAAAAACGGGAAAAGAATCAAAGCA
TAGTGCAAGAGTTACATGGGATGCAAAATGGGCATAAATTCGGGAACCTA
TGCT
back to top