EY659647

Overview
NameEY659647
Unique NameEY659647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCNC_DROME (Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 53/183 (28.96%), Postives = 82/183 (44.81%), Query Frame = 3
Query:  111 LNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQD-----------------HQMILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAALR 608
            LN +E Q + +F+ N ++ +        ++ ATA +YFKRFY + S+    P  +  TC+  A K+EE  V +      I Q                     IL  E  + + L+  LIVY PYRPL   + DM    Q+     +++ D            + TD  LL+PP Q+A+A L+
Sbjct:   32 LNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLTLSWRIVND-----------SLRTDVCLLYPPYQIAIACLQ 203          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCC12_ARATH (Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 40/126 (31.75%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  111 LNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEEL---GKGISQDHQM------ILNYEMIVYQALEFDLIVYPPYRPLEGFIND 461
            +++E+ + +++   N + ++        ++ ATA+ Y +R Y + S+ E+ P+ +  TC+Y ACK EE+ V A+ L    K +  D +       IL  EM V +AL F L+V+ PYR L  F+ D
Sbjct:   32 ISVEDFRLIKLHMSNYISKLAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACKAEESVVHAKLLVFYMKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQD 157          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCC11_ORYSJ (Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 50/175 (28.57%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  111 LNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEEL----GKGISQDHQM------ILNYEMIVYQALEFDLIVYPPYRPLEGFINDMEDFCQVKNGELQMLKDLHETAKLEVDKIMLTDAPLLFPPGQLALAAL 605
            + +EE + +++     +  +        ++ ATA+ YF+R Y + S+ E+ P+ +  TC+Y A K+EE+ V A  L     K  + D +       IL  EM + +AL++ L+VY PYRPL   + D              + DL + A   V+     D  L+ PP  +ALA +
Sbjct:   32 ITLEEFRLVKIHMSFHIWRLAQQVKVRQRVIATAVTYFRRVYTRKSMTEYDPRLVAPTCLYLASKVEESTVQARLLVFYIKKMCASDEKYRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQDAG------------ITDLTQFAWGIVNDTYKMDLILIHPPYMIALACI 194          
BLAST of EY659647 vs. ExPASy Swiss-Prot
Match: CCC11_ARATH (Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 38/130 (29.23%), Postives = 71/130 (54.62%), Query Frame = 3
Query:   99 RPKPLNIEEEQSMRVFYENKLREVCSAFYFPNKIQATALLYFKRFYLQWSVMEHHPKNIMLTCVYAACKIEENHVSAEELGKGISQ---------DHQMILNYEMIVYQALEFDLIVYPPYRPLEGFIND 461
            + + ++I++ + ++    N + ++        ++ ATA+ Y +R Y++ S++E  P+ + LTC+Y A K EE+ V A  L   I +         + + IL  EM V +AL++ L+V+ PYR L  F+ D
Sbjct:   28 KERGISIDDFKLIKFHMSNHIMKLAQHIKVRQRVVATAITYMRRVYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFYIKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQD 157          
The following BLAST results are available for this feature:
BLAST of EY659647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CCNC_DROME5.741e-1128.96Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 S... [more]
CCC12_ARATH5.741e-1131.75Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=... [more]
CCC11_ORYSJ7.497e-1128.57Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os0... [more]
CCC11_ARATH9.792e-1129.23Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-E08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659647 ID=EY659647; Name=EY659647; organism=Citrus sinensis; type=EST; length=904bp
ANAATTTGGAACAACACAAATGGAGGTTGATCGCTGATGGGTCATTTTCA
TACCCAGAACCTCAAAATAATGCCAAGGACAACAGTGAAAAGCATTCTCG
TCCGAAACCCCTCAATATCGAAGAGGAACAGTCTATGCGAGTATTTTATG
AGAATAAACTTCGCGAAGTATGCAGTGCATTTTATTTTCCTAATAAAATT
CAGGCAACGGCTCTGTTATACTTCAAAAGGTTCTATCTGCAATGGTCGGT
CATGGAACATCACCCAAAAAATATAATGTTAACTTGTGTATATGCAGCTT
GTAAGATAGAGGAAAATCATGTTTCAGCAGAGGAGCTTGGCAAGGGAATT
TCACAGGATCATCAAATGATTCTCAACTATGAAATGATCGTTTATCAGGC
TTTGGAATTTGATCTTATCGTTTATCCACCATATCGTCCACTTGAAGGAT
TTATTAATGATATGGAAGATTTCTGCCAAGTAAAGAATGGCGAATTGCAG
ATGCTGAAGGATTTGCACGAAACTGCAAAGTTGGAAGTTGACAAAATCAT
GCTTACTGATGCACCACTTCTATTCCCCCCTGGGCAGTTGGCATTGGCTG
CTTTACGAAATTCAAACAAGGTTCAAAGAGTTGTCAACTACGAGAGTTAC
TTGAGCAGCATTCTATCTCGTCAAATTGCTGGGCACATCATTTCAGACCT
TACTNGAAATTTAGACACCATAGATTCCTGGGGGTATGAATATAAGTNCC
CCTCCAGAAAGGGATATGAGCACATCAACAGAAAAACTGAAATCTGNTGG
GGGCCATGGCTCACATGACGTGAGTAAAAAACGGGAAAAGAATCAAAGCA
TAGTGCAAGAGTTACATGGGATGCAAAATGGGCATAAATTCGGGAACCTA
TGCT
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