EY659545

Overview
NameEY659545
Unique NameEY659545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.046e-12
Identity = 40/115 (34.78%), Postives = 54/115 (46.96%), Query Frame = 3
Query:  384 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSY-ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725
            G P P  +   D+  ++PK  +E   +++   VL  V    AL    IS   W+  PL W   GT     FV+GHDC H SFS +  L   VG +    ++ PY  WR  H  HH
Sbjct:   25 GAPPPFKIA--DIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHH 137          
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 44/147 (29.93%), Postives = 61/147 (41.50%), Query Frame = 3
Query:  447 FEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHHAKKTCLTEIQLGILFGKKSLTHLPFCAKQYILIWPLSTL 842
            F+I D++A      W    L   SY         AL +  +    W+L PL W   GT     FV+GHDC H SFS   LL  +VG +    ++ PY  WR  H  HH     +   +  +   +K   +LP   +      PL  L
Sbjct:   31 FKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKLYKNLPHSTRMLRYTVPLPML 177          
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 40/118 (33.90%), Postives = 56/118 (47.46%), Query Frame = 3
Query:  384 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725
            G P P N+   D+  ++PK  +  +    WKS+   V   A+   + + A     W + PL W   GT     FV+GHDC H SFS +  L  +VG L    ++ PY  WR  H  HH
Sbjct:   49 GAPPPFNLA--DIRAAIPKHCWVKNP---WKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHH 161          
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 40/118 (33.90%), Postives = 56/118 (47.46%), Query Frame = 3
Query:  384 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725
            G P P N+   D+  ++PK  +  +    WKS+   V   A+   + + A     W + PL W   GT     FV+GHDC H SFS +  L  +VG L    ++ PY  WR  H  HH
Sbjct:   91 GAPPPFNLA--DIRAAIPKHCWVKNP---WKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHH 203          
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 3
Query:  393 LPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLA--------WAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHHAKKTCLTEIQL 758
            LPE  T+K++ + +P   FE   ++    V + ++  +L  L  ++   +  PL         W   G   TG +V+ H+C H+SFS +K L + VG +    L+ PY  WR  H KHH     +T+ Q+
Sbjct:   35 LPE-FTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQV 163          
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 3
Query:  393 LPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLA--------WAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHHAKKTCLTEIQL 758
            LPE  T+K++ + +P   FE   ++    V + ++  +L  L  ++   +  PL         W   G   TG +V+ H+C H+SFS +K L + VG +    L+ PY  WR  H KHH     +T+ Q+
Sbjct:   35 LPE-FTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQV 163          
The following BLAST results are available for this feature:
BLAST of EY659545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
FAD3E_PHAAU7.046e-1234.78Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA2.050e-1129.93Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA2.050e-1133.90Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH2.050e-1133.90Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD12_MORIS4.567e-1130.00Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP4.567e-1130.00Delta(12) fatty acid desaturase OS=Mortierella alp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-C12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659545 ID=EY659545; Name=EY659545; organism=Citrus sinensis; type=EST; length=929bp
AGAAATTCTATCCATCCACTTTTTTCACATTCACTCAATCCCAATTATAT
CCAAGTGGGAAGGGGGCTCTTGTGAATTGGAATTTCTGCATTTCTCTTGC
TCAAAACATAATGGCTTGCAGACTTGCAGATTCTATGTTCCTTTTCATGG
GCCCCCATCAAAGGCCAACTGGGAGTCAGAAAATTGGATGCTTTAGTTCA
CCTGGCCTTTGTCAGCTGAAGTGGGAGAGTCTTCTTGTGAAGGGAGTTAA
GCACAAAAGATGTTCAATTCCCTCTCGAGGGACTAGATTTATACAGGCTG
TGGCCGTTCCAGTTGCACCACCTTCAGAAGACAGTGCGGATTGTAGAAAG
CAGATAGCAGAAAGTTATGGGTTTAGGCAAATCGGAGAGCCACTGCCTGA
AAATGTGACAATGAAGGATGTCATTGATTCTCTCCCAAAAAAGGTATTTG
AGATTGATGATGTGAAAGCATGGAAGTCTGTTTTATTATCCGTCAGTTCA
TATGCGTTGGGGCTTCTCATGATCTCAAAGGCCCCATGGTATTTGCTTCC
TTTGGCTTGGGCATGGACAGGGACTGCGGTCACAGGGTTCTTTGTTATAG
GCCATGATTGTGCCCACAAATCATTTTCGAAGAACAAGTTACTGGGAGAC
ATCGTGGGAACCCTGGCCTTTCTGCCACTGATATACCCATATGAACCCTG
GCGGTTTAAGCACGACAAGCATCATGCCAAAAAAACATGCTTGACGGAGA
TACAGCTTGGCATCCTGTTTGGAAAGAAGAGTTTGACACATCTCCCCTTT
TGCGCAAAGCAATATATATTGATATGGCCCCTTTCGACCCTGGAGTCAAT
AGCTCACTGGTTGATCTGGCCCTTTGATTTGACCAAGTCACGCCACATGA
GTTAAAAGGGTGAAATAATTTGGCATGTG
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