EY659450

Overview
NameEY659450
Unique NameEY659450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659450_ssr818 microsatellite EY659450_ssr818:818..829. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659450 vs. ExPASy Swiss-Prot
Match: CCPR_YEAST (Cytochrome c peroxidase, mitochondrial OS=Saccharomyces cerevisiae GN=CCP1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.005e-25
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  127 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIFYRMGLSDR 501
            Y    P+++RLAWH +GT+D +  TGG   G+ R ++E++  SN GL+    F E +  + P I+  DL+ L GV AV+   GP + +  GR D+    +P  GRLPDA + A ++R  F R+ ++DR
Sbjct:  106 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR 233          

HSP 2 Score: 43.1282 bits (100), Expect = 2.005e-25
Identity = 17/43 (39.53%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  498 QDIVALSGGHTLGRAHPERSCFDGPWTREPLKFDNSYFVELLN 626
            +++VAL G H LG+ H + S ++GPW      F N +++ LLN
Sbjct:  233 REVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN 275          
BLAST of EY659450 vs. ExPASy Swiss-Prot
Match: APX6_ARATH (Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.380e-17
Identity = 51/128 (39.84%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  121 IAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHPKI---TYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLS 495
            +  K  A  +LRL +HDAGT++++  +GG NGSI  E E     N GLK +L    + K K  +I   ++AD+  +AG  AV + GGPT+  V GR DS     EG+LP     A  L++ F R G S
Sbjct:  108 VVTKGKAAGVLRLVFHDAGTFELDDHSGGINGSIAYELE--RPENIGLKKSLKVLAKAKVKVDEIQPVSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPDPEGKLPPETLSASGLKECFKRKGFS 233          

HSP 2 Score: 28.4906 bits (62), Expect = 4.380e-17
Identity = 16/42 (38.10%), Postives = 22/42 (52.38%), Query Frame = 3
Query:  498 QDIVALSGGHTLGRAHPERSCFDGPWTREPLKFDNSYFVELL 623
            Q++VALSG HT+G               +P  FDN+Y+  LL
Sbjct:  235 QELVALSGAHTIG----------SKGFGDPTVFDNAYYKILL 266          
The following BLAST results are available for this feature:
BLAST of EY659450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CCPR_YEAST2.005e-2538.28Cytochrome c peroxidase, mitochondrial OS=Saccharo... [more]
APX6_ARATH4.380e-1739.84Putative L-ascorbate peroxidase 6 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659450 ID=EY659450; Name=EY659450; organism=Citrus sinensis; type=EST; length=942bp
CGACAGCTGTCGTAAACTGTCAAAGGTCGTTACACAAAAAGAGCTCCGAT
GGCTTTACCGGTCGTTGACACAGAGTACCTGAAGGAGATCGACAAGGCTC
GTCGCGATCTCCGCGCTCTTATCGCTTACAAGAACTGTGCTCCAATCATG
CTCCGTCTAGCGTGGCACGACGCGGGAACATATGACGTGAACACGAAGAC
TGGTGGACCAAATGGCTCGATAAGGAACGAAGAGGAGTACTCTCATGGCT
CCAACAATGGCTTGAAAATCGCTCTTGATTTTTGTGAGGAAGTGAAGGCT
AAACATCCAAAAATAACATATGCAGACCTATACCAGCTTGCGGGTGTTGT
TGCAGTTGAGGTCACTGGAGGTCCTACAGTCGACTTTGTTCCTGGTAGAA
AGGATTCAAAAATTTCTCCCAAGGAAGGGCGTCTTCCAGATGCCAAACGA
GGTGCACCTCATCTGAGGGATATCTTTTATCGGATGGGTCTGTCTGACAG
GATATAGTGGCACTCTCAGGGGGCCATACTTTGGGAAGGGCACATCCAGA
GAGATCATGTTTTGACGGCCCTTGGACCAGGGAGCCTCTGAAATTTGATA
ACTCATACTTTGTGGAGTTGCTGAATGGGGAATCAGAAGGATTACTGGCA
CTTCCAACAGACANGGGCTTATTANAAGACCCTGAGTTCCGTCGTTATGG
TGAGTTGTATGCAAAGGTCAATGCACTTATCTTACCAAATACCCCATGTT
AACAGCGCTTCATTTGATCAAGCCATATATTTATTTCTGGCTGACAGAAC
TTTACTGGGTTTTCCTTTGCTGCTGCTGCAAATTTATGGGATGATCTTTT
AAAAAAAAAAAAAAAAAAAAAAGGGCGGGCCGTTTAAAGGATCAAGCTTC
TTCCCTGCATGGGAGGGATAAGTTTTTTTGGGGCCCCAAATA
back to top