EY659449

Overview
NameEY659449
Unique NameEY659449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7481 contig Csv1_Contig7481:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.407e-46
Identity = 96/214 (44.86%), Postives = 143/214 (66.82%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKT 703
            ++PSILSA+FA+L ++ KAVE  G DW+HVDVMD  FVPN+T+G  VV++L   TD PLD HLMI  P++  P +++AGA  V+ H E ++  + L R   +I++ GA+A + L PAT +   E +L  +D++LIM+V PGFGGQ+F++  + KI   R +  ++G+  W++VDGGV         +AG     AGSAV+GA D AEA++ ++T
Sbjct:    5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAAPVRLAR---EIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTRELIKKHGLELWLQVDGGVSAATIERCADAGADVFVAGSAVYGASDPAEAVRALRT 213          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.400e-46
Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKT 703
            +++PSILSA+FA+L E       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK  G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI   + K+ ++RR   E+G +  +EVDGGV   N      AG     AGSA+F   DY + I  +++
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRS 217          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.400e-46
Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKT 703
            +++PSILSA+FA+L E       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK  G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI   + K+ ++RR   E+G +  +EVDGGV   N      AG     AGSA+F   DY + I  +++
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRS 217          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.400e-46
Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKT 703
            +++PSILSA+FA+L E       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK  G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI   + K+ ++RR   E+G +  +EVDGGV   N      AG     AGSA+F   DY + I  +++
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRS 217          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.400e-46
Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKT 703
            +++PSILSA+FA+L E       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK  G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI   + K+ ++RR   E+G +  +EVDGGV   N      AG     AGSA+F   DY + I  +++
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRS 217          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.983e-46
Identity = 98/213 (46.01%), Postives = 137/213 (64.32%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIK 700
            ++ SILSA+FA+L E  K    AG DWIH DVMD  +VPN+T+GP+++ ALR     +P+DVHLM+   +  +P F +AGAD ++ H E  ST H+ RTL  IK  G KAG+ LNPATSL+ ++ V++ +DL+L+MSVNPGFG QSF+ +   K+ ++R+    N  N  +EVDGGV  +N      +G      GS +FG  DY   IK I+
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGVKLENISEVAFSGANVFVIGSGIFGYTDYNVIIKKIR 216          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.533e-43
Identity = 93/201 (46.27%), Postives = 126/201 (62.69%), Query Frame = 2
Query:   59 IIVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            I ++PSILSA+FA    +++A+E  G DW+HVDVMDG FVPN+T GP  V A R      +DVHLMI   +  +  + +AGAD+++ H E     H+HRTL  I++ G K+GV +NP T   AIE VLD+ D+V +M+VNPGFGGQ +I+    K+  LR M  +  V+  IE+DGG+ P  A     AG     AGS VF
Sbjct:    7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKYID-MTAKVRKLRAMIGDRPVH--IEIDGGMDPVTAPLMAAAGADVFVAGSGVF 202          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_RHORU (Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.746e-42
Identity = 102/218 (46.79%), Postives = 136/218 (62.39%), Query Frame = 2
Query:   59 IIVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL----RRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIK 700
            I ++PS+LSA+FA    +  +    G D +H DVMD  +VPN+T+GPLV  ALRP T LP+DVHLM    +  +  F +AGAD+++ H E S   H+HR++  I+  G KAGV LNPA+ LS ++ +L+ +DLVLIMSVNPGFGGQSFI S + KI+ L    RR C  +       VDGGV P +A      G   L    A+FGA D A+AI  I+
Sbjct:    5 IRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLPIDVHLMTRPVDPLIDSFAEAGADMITFHPEASD--HVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLIMSVNPGFGGQSFIPSALPKIAALANGRRRACRGD------RVDGGVNPADARALARPGADIL-VRLAIFGASDRAKAIASIR 213          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.117e-42
Identity = 92/213 (43.19%), Postives = 136/213 (63.85%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIK 700
            ++PSILSA+FA+L E +K V  AG D IH DVMD  +VPN+++GP+++++LR      P+DVHLM+   +  +P F KAGA  ++ H E  +T+H+ RTL  IK  G KAG+  NPAT L+ ++ +L+ +DL+L+MSVNPGFG QSF+ S   K+ ++R++   N  +  +EVDGGV   N      AG      GS +F   +Y   I+ I+
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFGNQSFLPSTFNKLREVRKIIDANFSDILLEVDGGVKLDNIADIACAGANVFVMGSGLFKYSNYKLVIEKIR 216          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_MYCTU (Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.036e-41
Identity = 93/221 (42.08%), Postives = 133/221 (60.18%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKTSKGXKQL 724
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I++ GAKAG+ + P T L     +L   D +L+MSV PGFGGQ FI   + K+  +R+M     +   +E+DGG+         EAG     AGSAV+GA D A A+  ++   G   L
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAAAVAALRRQAGAASL 225          
The following BLAST results are available for this feature:
BLAST of EY659449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_STRCO1.407e-4644.86Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]
RPE_SHIFL2.400e-4646.98Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_ECOLI2.400e-4646.98Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECOL62.400e-4646.98Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO572.400e-4646.98Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_BUCAP6.983e-4646.01Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_RHOCA5.533e-4346.27Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]
RPE_RHORU2.746e-4246.79Ribulose-phosphate 3-epimerase OS=Rhodospirillum r... [more]
RPE_BUCAI6.117e-4243.19Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_MYCTU3.036e-4142.08Ribulose-phosphate 3-epimerase OS=Mycobacterium tu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659449 ID=EY659449; Name=EY659449; organism=Citrus sinensis; type=EST; length=888bp
GAGAATTTTTACTATAGTGAAGGCATCAGCTCGCGCGGATAAGTTCTCGA
AAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAG
TTAGTCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCA
TGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTC
TTGTGGTTGATGCTTTGCGCCCTGTGACAGACCTTCCTTTGGATGTTCAT
TTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAAGGCTGG
AGCTGACATAGTCAGCGTCCACTGTGAGCAATCATCCACTATTCATTTGC
ACCGCACTCTTACCCAAATAAAAAGTTTGGGAGCTAAAGCTGGAGTTGTC
CTCAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTGATGTGGT
TGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGTGGGCAAAGCT
TTATTGAGAGCCAAGTAAAAAAAATCTCAGACTTGAGAAGAATGTGTTTA
GAGAATGGAGTAAACCCATGGATTGAAGTAGATGGTGGAGTAGGTCCGAA
AAATGCATANTAGGNTATTGAAGCTGGGCGCTATGCCTTGGGTGCTGGTT
CAGCTGTCTTTGGAGCTAAAGATTATGCTGAAGCTATAAAGGGAATAAAA
ACCAGCAAAGGCCANAAGCAGTTGCAGTGTGAACAGATGATTACAAAAGG
ACTGATTAGATTCATTCTGCAGTATCTGTATCACCCACCTATGCCCAGTA
ATTANTCGCCTATTGCTTGGTCATGTCGTTGGCAGAATCATCTCCCTTCT
GGGGCGGTCCCTGTTGTTGGGGAGGTACTATAAAAATC
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