EY659449

Overview
NameEY659449
Unique NameEY659449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7481 contig Csv1_Contig7481:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_MYCBO (Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis GN=rpe PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.036e-41
Identity = 93/221 (42.08%), Postives = 133/221 (60.18%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKTSKGXKQL 724
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I++ GAKAG+ + P T L     +L   D +L+MSV PGFGGQ FI   + K+  +R+M     +   +E+DGG+         EAG     AGSAV+GA D A A+  ++   G   L
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAAAVAALRRQAGAASL 225          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.154e-40
Identity = 86/199 (43.22%), Postives = 124/199 (62.31%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            ++PS+LSA+F+ L   +  +E  G  W+H+DVMDG FVPN+T G  V+  LR  T LP DVHLM+  P   + DF++AGAD ++ H E  + +H HR +  I+  G K G+ L P+T ++A+  VL  VDLVL+M+VNPGF GQ  I   + K+S L +M  E G +  I VDGG+  +     ++AG   + +GSA F
Sbjct:    7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMTVNPGFSGQQMIAHCLSKVSALVQMRTERGYSYMISVDGGIDCRTLPQALDAGADVIVSGSAFF 203          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_METJA (Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii GN=rpe PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.176e-39
Identity = 93/214 (43.46%), Postives = 132/214 (61.68%), Query Frame = 2
Query:   59 IIVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIK 700
            I +  SILSA+F  L E++K  E AG D+ HVD+MDG FVPNI++G  +   ++ +T+LP++VHLM+   +  V +F +   D ++ H E  +     R + +IKS+GAK  V LNPAT L AIE +L  V  VL+M+V PGF GQ FI    KKI  L+ M +ENG +  I VDGG+  + A   ++AG   L A SA+FG  D   A+K ++
Sbjct:    2 IKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEEM--DYITFHIE--AVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLR 211          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_MYCLE (Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae GN=rpe PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.847e-39
Identity = 89/217 (41.01%), Postives = 131/217 (60.37%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKTSKG 712
            +++PSIL+A+FA+L ++   V  A  DW+HVDVMDG FVPN+TIG  VV +L   +D+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I++ GAKAG+ + P T L+    +L   D +LIMSV PGFGGQ+FI   + K+  +R+M     +   +E+DGG+         EAG     AGSAV+GA D + A+  ++   G
Sbjct:    4 LIAPSILAADFARLTDEAAVV--ASADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVAHDIRTAGAKAGIGVKPGTPLNPYLDILPHFDTLLIMSVEPGFGGQAFIPEVLSKVRTVRKMVDAGELTILVEIDGGINADTIEQAAEAGVDCFVAGSAVYGAADPSAAVAALRRRAG 216          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_HELPJ (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori J99 GN=rpe PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.080e-38
Identity = 87/212 (41.04%), Postives = 134/212 (63.21%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIK 700
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP++++ +  ++ +PLDVHLM+      V  F      I+S+H E     H HR L  IKS G   G+VLNP T   +I+ +L+ V LVL+MSVNPGFGGQ F++  ++K   ++ +      +  +EVDGGV  KN     +AG   + +GS +F +KD   AI+G++
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK--HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFESKDRKLAIEGLQ 210          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_HELPY (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori GN=rpe PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.842e-38
Identity = 87/212 (41.04%), Postives = 134/212 (63.21%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIK 700
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP+V++ +  ++ +PLDVHLM+         F      I+S+H E     H HR L  IK+LG   G+VLNP T   +I+ +L+ V LVL+MSVNPGFGGQ F++  ++K   ++ +      +  +EVDGGV  KN     +AG   + +GS +F +KD   AI+G++
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFAELFAPLKPQIISIHAENEK--HPHRVLQLIKNLGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFKSKDRKLAIEGLQ 210          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_BUCBP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpe PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.724e-36
Identity = 89/228 (39.04%), Postives = 133/228 (58.33%), Query Frame = 2
Query:   62 IVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKTSKGXKQLQCEQ 736
            ++S S+LSANF++L E +  V  +G D IH DVMD  +V N+T GP+V+++LR V  +    +DVHLM    +  +  F K   +I+S H E  ST ++ +T+  IKS G K G+ LNP T L  ++ VLD +DL+L+MSVNPGF GQ FI S + KI  +R +  ++  N  +EVDGG+   N       G      GSA+F + +Y   I+  +     K + C++
Sbjct:    5 LLSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE--STNNVEKTIKLIKSYGCKVGLALNPLTPLCVLDNVLDKIDLILLMSVNPGFPGQKFIPSILNKIRIVRELIDKSKKNILLEVDGGINLSNIFKIASFGTDIFVIGSAIFNSINYDLTIRSFRDV--LKNINCKK 228          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35
Identity = 83/217 (38.25%), Postives = 122/217 (56.22%), Query Frame = 2
Query:   65 VSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVFGAKDYAEAIKGIKTS 706
            ++PS+LS++FA L  +   +   G DW+H+D+MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S   +    +  IK+ G + GV L P T +  +  +++    V+LVL+M+V PGFGGQ F+   ++K+  LR+          IEVDGG+GP        AG   + AGS++FGA +  E I  ++ S
Sbjct:    9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLD----IEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_CHLTR (Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis GN=rpe PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35
Identity = 84/212 (39.62%), Postives = 126/212 (59.43%), Query Frame = 2
Query:   32 RADKFSKSDIIVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR--MCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            R +   K  ++V+PSI+ A+ A +  + + +E +G D IH+DVMDG FVPNIT GP VV A+   T+L L+VH MI  P + V  F+KAGAD + VH E +  I     ++ I+  G +AGV  +P TS+  +   + + D++L+MSV+PGF GQ FI   +++I  +++    L    +  IEVDGG+  ++A    EAG   L A S  F
Sbjct:    2 REEAMKKQGVLVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENI--KEIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDTIERIQFVKQAIQVLGREGSCLIEVDGGIDKESARACREAGADILVAASYFF 211          
BLAST of EY659449 vs. ExPASy Swiss-Prot
Match: RPE_CHLMU (Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum GN=rpe PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.460e-35
Identity = 84/206 (40.78%), Postives = 123/206 (59.71%), Query Frame = 2
Query:   50 KSDIIVSPSILSANFAKLVEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLTQIKSLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR--MCLENGVNPWIEVDGGVGPKNAX*XIEAGRYALGAGSAVF 661
            K  ++++PSI+ A+ A L +  + +E +G + IH+DVMDG FVPNIT GP ++ A+   TDL L+VH MI  P + V  F+KAGAD + VH E +   +L   L  I+  G +AG+  +P TS+  I   + + D++L+MSV PGF GQ FI   ++KI  +R+    L    +  IEVDGG+  ++A    EAG   L A S  F
Sbjct:    3 KQGVLIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRSTDLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAE--NLKEILDYIRKCGVQAGIAFSPETSIEFISAFIPLCDVILLMSVQPGFCGQKFIPDTIEKIRFVRQAIQTLGKEGSCLIEVDGGIDEESARACREAGADILVAASYFF 206          
The following BLAST results are available for this feature:
BLAST of EY659449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_MYCBO3.036e-4142.08Ribulose-phosphate 3-epimerase OS=Mycobacterium bo... [more]
RPE_TREPA1.154e-4043.22Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
RPE_METJA2.176e-3943.46Ribulose-phosphate 3-epimerase OS=Methanocaldococc... [more]
RPE_MYCLE4.847e-3941.01Ribulose-phosphate 3-epimerase OS=Mycobacterium le... [more]
RPE_HELPJ1.080e-3841.04Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_HELPY1.842e-3841.04Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_BUCBP1.724e-3639.04Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE1_ORYSJ5.546e-3538.25Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
RPE_CHLTR9.460e-3539.62Ribulose-phosphate 3-epimerase OS=Chlamydia tracho... [more]
RPE_CHLMU9.460e-3540.78Ribulose-phosphate 3-epimerase OS=Chlamydia murida... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659449 ID=EY659449; Name=EY659449; organism=Citrus sinensis; type=EST; length=888bp
GAGAATTTTTACTATAGTGAAGGCATCAGCTCGCGCGGATAAGTTCTCGA
AAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAG
TTAGTCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCA
TGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTC
TTGTGGTTGATGCTTTGCGCCCTGTGACAGACCTTCCTTTGGATGTTCAT
TTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAAGGCTGG
AGCTGACATAGTCAGCGTCCACTGTGAGCAATCATCCACTATTCATTTGC
ACCGCACTCTTACCCAAATAAAAAGTTTGGGAGCTAAAGCTGGAGTTGTC
CTCAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTGATGTGGT
TGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGTGGGCAAAGCT
TTATTGAGAGCCAAGTAAAAAAAATCTCAGACTTGAGAAGAATGTGTTTA
GAGAATGGAGTAAACCCATGGATTGAAGTAGATGGTGGAGTAGGTCCGAA
AAATGCATANTAGGNTATTGAAGCTGGGCGCTATGCCTTGGGTGCTGGTT
CAGCTGTCTTTGGAGCTAAAGATTATGCTGAAGCTATAAAGGGAATAAAA
ACCAGCAAAGGCCANAAGCAGTTGCAGTGTGAACAGATGATTACAAAAGG
ACTGATTAGATTCATTCTGCAGTATCTGTATCACCCACCTATGCCCAGTA
ATTANTCGCCTATTGCTTGGTCATGTCGTTGGCAGAATCATCTCCCTTCT
GGGGCGGTCCCTGTTGTTGGGGAGGTACTATAAAAATC
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