EY659397

Overview
NameEY659397
Unique NameEY659397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:23..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.436e-14
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  232 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 537
            +K ET SYLP ++ + +  ++ Y+I  GW P +E            H  P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106          
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.537e-13
Identity = 37/114 (32.46%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  232 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 573
            +K  T SYLPP+ +  + +++ +++++GW P +E            H  P +    YW MWKLPM+G TD   +L E+    +  P   VR+IG+DN  Q Q  + I  +   V
Sbjct:   17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGTAV 118          
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.619e-13
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 1
Query:  205 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 552
            M V     LKK+ET SYLP ++ E + ++I + I  GW P +E   EKG   +            YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q Q ++F+
Sbjct:    1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105          
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  235 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 552
            K+ET SYLP +  E + ++I YLI  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++G+DN  Q Q  +F+
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105          
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  235 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 552
            K+ET SYLPP++ E +  +I Y I  GW P +E    K  +             +YW MWKLP +G  +   VL E+   +  YP   V+++ +DN  Q   ++F+
Sbjct:   12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105          
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 1
Query:  241 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 552
            ET  +LPP++ + +  +I Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 1
Query:  241 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 552
            ET  +LPP++ + +  +I Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of EY659397 vs. ExPASy Swiss-Prot
Match: RBS_GUITH (Ribulose bisphosphate carboxylase small chain OS=Guillardia theta GN=rbcS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  250 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ--CISFIAAKP 564
            S+LP L+DE ++K+I Y I   W   +E      W    H ++       YW +W LP++G  D   V+ E+   +K  P  +V++  FDN R V+  C+SFI  +P
Sbjct:    9 SFLPDLTDEQIVKQIQYAISKNWALNVE------WTDDPHPRNA------YWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRP 103          
The following BLAST results are available for this feature:
BLAST of EY659397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS1_HYDMR1.436e-1440.20Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_RHOCA3.537e-1332.46Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_NITVU4.619e-1334.48Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS1_THIFE6.033e-1335.85Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_HALNC2.535e-1133.02Ribulose bisphosphate carboxylase small chain OS=H... [more]
RBS_SYNPX3.311e-1132.69Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNPW3.311e-1132.69Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_GUITH3.311e-1133.64Ribulose bisphosphate carboxylase small chain OS=G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659397 ID=EY659397; Name=EY659397; organism=Citrus sinensis; type=EST; length=891bp
CAAAGCTATAACAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATC
GGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGG
TCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAG
AAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCA
ATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCT
CATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTAC
CTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGG
ATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCT
ACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAG
GTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGT
CCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCA
TTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACC
ACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCA
TTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGT
TGCTGCTGCTCAACTTTTTTGGGTTTCTCCCCGACTTTGGCTTCTTTTTT
TTTTTTTTATTATATTTTAATAATTGATCCTTTGTTTTCAGTTTCATTAA
TCTGGGCCTCGGATGTTCAGTTAATGAGTGAGAATACTGGAATAAAAGAG
TAGTTTATGATTCTGGCAAAAAAAAAAAAAAAAAAGGCGCC
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