EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.381e-29
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G FITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFP+T +N  W IV+GL I++FSR+K+D+TA+EL +EK
Sbjct:  219 LKGGFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGQFVSMGVISDGNSYGVPEDLMYSFPLTIKNKTWKIVEGLCINDFSREKMDITAKELQDEK 324          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 7.028e-29
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 9.179e-29
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  219 LKGEFITTVQQRGAAVIKARKLSSAMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.045e-28
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +FI  VQ RGA +I ARK             H+RDW+LGT +G  VSM VYSDGSYNVP GLI+SFPVTC NG+WTIVQGL I+  +++K+D T +EL EEK
Sbjct:  282 QFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEK 383          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.488e-28
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            E+I TV +RGAAII+AR             DH+RDW LGT EG WVSMG+ SDGSY VP GLIY FPVT ++G++ IVQGL I EFSR K+D TA EL EE+
Sbjct:  219 EYIPTVAKRGAAIIEARGASSAASAASAAIDHMRDWALGTSEGEWVSMGIPSDGSYGVPEGLIYGFPVTVKDGKYQIVQGLEISEFSRGKMDATARELEEER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM V SDGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  216 IENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +  +FI TV +RGAAII AR             D  RDW+LGTP G WVSM V SDGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  216 IENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FI TVQQRGAA+IKARK           CDH+RD   GTP G +VSMGV SDG SY VP  L+YSFPV  ++  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  219 LKGDFILTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.731e-27
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            +  EFI TV  RGAAII+AR             D  RDW+LGTPEG WVSM V SDGSY VP GL+YS+PVT   G W IV+GL +++FSR+K+D TA EL +E+A
Sbjct:  215 IENEFIPTVAGRGAAIIEARGASSAASAASATIDAARDWLLGTPEGDWVSMAVASDGSYGVPEGLMYSYPVTTSGGNWEIVEGLEVNDFSRRKMDATAAELFDERA 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +R +FI TVQQRG AII+AR             DHI DWVLGTP G W SM V SDGSY VP GLI SFPVTC +G + IV+GL +D FSR+++D +  EL+ E+
Sbjct:  219 LREDFIPTVQQRGTAIIQARGASSAASAASAAIDHIHDWVLGTPAGEWTSMAVPSDGSYGVPDGLISSFPVTCADGAYRIVEGLEVDAFSRERIDASVAELTAER 323          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDHC_XENLA5.381e-2959.43Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDHC_MOUSE7.028e-2961.32Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_RAT9.179e-2961.32Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHA_DICDI2.045e-2857.84Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_DEIDV3.488e-2859.80Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_MYCPA7.771e-2857.14Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_MYCA17.771e-2857.14Malate dehydrogenase OS=Mycobacterium avium (strai... [more]
MDHC_CHICK1.325e-2757.55Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDH_ARTAT1.731e-2755.66Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDH_NOCFA1.465e-2655.24Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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