EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   13 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            G FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MGV SDGSY +P G+I+ FPVT  NG++T+V+ L ID+FS+K +D T  EL EE++
Sbjct:  219 GTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            FI TV +RGAAII+AR             DH+  WV GT EG W SMG+ SDGSY VP G+I SFPVT ++G++ IVQGL I+EFSR ++D + +EL+EE+
Sbjct:  220 FIPTVAKRGAAIIEARGASSAASAANAAIDHVHTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +   FI TV +RGAAII+AR             D  RDW+ G+ +  WVSM V SDGSY VP GLI SFPVT ++G+W IVQGL ID+FSR K+D +  EL++E+
Sbjct:  215 IESTFIPTVAKRGAAIIEARGSSSAASAASATIDAARDWLFGSADADWVSMAVVSDGSYGVPEGLISSFPVTTKDGDWEIVQGLEIDDFSRAKIDASTAELADER 319          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            FI TV +RGA II AR             D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D TA EL++E+
Sbjct:  220 FIPTVAKRGATIIDARGASSAASAASASVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTAAELADER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            FI TV +RGAAII AR             D  R W+LGTP   WVSM V SDGSY VP GLI SFPVT ++G W+IV+GL IDEFSR ++D T  EL++E+
Sbjct:  220 FIPTVAKRGAAIIDARGASSAASAASATVDAARSWLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTTAELADER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY  PVT  NGE+  V+GL ID FSR++LD T +EL EE+
Sbjct:  219 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGVPVTTENGEYKRVEGLEIDAFSRERLDFTLKELLEER 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.056e-24
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            F+ TV +RGAAII+AR             DH+RDWVLG+ E  WV+MGV SDGSY +PAG+++ FP  C+ G+++I+QGL IDE+SR+K++ T +EL++E
Sbjct:  223 FLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSDE--WVTMGVPSDGSYGIPAGIVFGFPCECKGGKFSIIQGLEIDEYSREKINFTLKELTDE 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DHIRDWVLGT  G WV+MGV SDGSY +P G+++ FPVT  NG++TIV+ L ID+FS+K +D T  EL EE++
Sbjct:  221 FIPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DHIRDWVLGT  G WV+MGV SDGSY +P G+++ FPVT  NG++TIV+ L ID+FS+K +D T  EL EE++
Sbjct:  221 FIPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-SGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DHI DWVLGT  G WV+MG+ S G Y +PA +IY FPVTC NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  222 FIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYGIPAEVIYGFPVTCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_XANC82.340e-2452.88Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_STRGG2.340e-2453.47Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_NOCSJ2.340e-2451.43Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_MYCUA2.340e-2455.45Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM2.340e-2455.45Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_BORPD2.340e-2453.85Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_DECAR3.056e-2451.00Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]
MDH_XANC53.991e-2454.90Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANAC3.991e-2454.90Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_POLSQ3.991e-2453.92Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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