EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            F+ TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P   ++ FPVT  NGE+ IVQGL ID FS+++++LT +ELSEE+
Sbjct:  222 FLPTVGKRGAAIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEER 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.212e-24
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +FI TV +RGAAII+AR             DH+  WV GT +G W SMG+ SDGSY VP GLI SFPVT ++G + IVQGL I+EFSR ++D + +EL EE+
Sbjct:  219 DFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTADGDWTSMGIPSDGSYGVPEGLISSFPVTTKDGRYEIVQGLEINEFSRARIDASVKELEEER 320
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.212e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.212e-24
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  219 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.212e-24
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  219 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.212e-24
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  219 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURS3 (Malate dehydrogenase OS=Burkholderia sp. (strain 383) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  ++GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRIEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURPS (Malate dehydrogenase OS=Burkholderia pseudomallei GN=mdh PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  ++Y   VTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIVYGVAVTCENGEYKRVEGLQIDAFSREKMDNTLNELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_HERAR3.991e-2453.47Malate dehydrogenase OS=Herminiimonas arsenicoxyda... [more]
MDH_STRAW5.212e-2452.94Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_BURCM5.212e-2453.85Malate dehydrogenase OS=Burkholderia ambifaria (st... [more]
MDH_BORPE5.212e-2451.92Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA5.212e-2451.92Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR5.212e-2451.92Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH_BURS36.807e-2452.88Malate dehydrogenase OS=Burkholderia sp. (strain 3... [more]
MDH_BURPS6.807e-2453.85Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP86.807e-2452.88Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_BURP66.807e-2453.85Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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