EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.807e-24
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  217 RDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 8.891e-24
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:   10 RGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            R  F+ TV +RGAAII AR             DHI DWVLGT  G W +MG+ SDGSY +P G+I+ FPVT  NGE+ IVQGLSID FS++++++T  EL EE+
Sbjct:  219 RDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 321
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.161e-23
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:   13 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            G+FI TV  RG+AII+AR             DH+ DWVLGTPEG W S+ + S G+Y VP GL+ SFPV   +G W +V+GL ID+FSRK++D +  +L  E+
Sbjct:  220 GDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESER 322
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.161e-23
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            FI TV +RGAAII+AR             DHI DWVLGT  G WV+MG+ S G Y++PA +IY FPV C NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  222 FIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYDIPAEVIYGFPVVCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322
[Close]
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.161e-23
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPV-TCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++G+FITTVQQRGAAIIKAR             D +R     TPEG W S+ V SDGSY +  GLI SFPV T ++G W IVQGL +D FSR+K+D T  EL EE+
Sbjct:  215 LKGDFITTVQQRGAAIIKARGASSAASAASAAVDTVRSLATQTPEGDWYSVAVCSDGSYGIEKGLICSFPVRTTKDGGWEIVQGLPVDAFSREKIDATVNELKEER 320
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_BURP16.807e-2453.85Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP06.807e-2453.85Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS6.807e-2453.85Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA6.807e-2453.85Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]
MDH_BURM96.807e-2453.85Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM76.807e-2453.85Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_AQUAR8.891e-2452.88Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_RHOOB1.161e-2348.54Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_POLNS1.161e-2352.94Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_AKKM81.161e-2353.77Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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