EY659312

Overview
NameEY659312
Unique NameEY659312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length991
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659312_ssr167 microsatellite EY659312_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659312 vs. ExPASy Swiss-Prot
Match: AMT_MYCTU (Probable ammonia channel OS=Mycobacterium tuberculosis GN=amt PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.005e-16
Identity = 61/183 (33.33%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  230 VPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMV-LPF---YPMASMVWFQCVFAAITLVILAGSVLGRMNIKAXMAFVPLW-LIVSYTVGAFXLWGGGFXCFTGG 763
            VPD    GD AW ++S+ LV L + PGL   YG +V+ K  +N   M++ A   V + WA + Y ++FGD +    G      G K LI  +A+        D S +TA V +P     P    V FQ +FA IT+ +++G+V  R+   A + F  LW   V + V  +     GF    GG
Sbjct:    9 VPDG---GDTAWMLVSSALVLLMT-PGLAFFYGGMVRSKSVLNMIMMSISAMGVVTVLWALYGYSIAFGDDVGNIAGNPSQYWGLKGLIGVNAVAA------DPSTQTAAVNIPLAGTLPATVFVAFQLMFAIITVALISGAVADRLKFGAWLLFAGLWATFVYFPVAHWVFAFDGFAAEHGG 181          
BLAST of EY659312 vs. ExPASy Swiss-Prot
Match: AMT_MYCBO (Probable ammonia channel OS=Mycobacterium bovis GN=amt PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.005e-16
Identity = 61/183 (33.33%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  230 VPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMV-LPF---YPMASMVWFQCVFAAITLVILAGSVLGRMNIKAXMAFVPLW-LIVSYTVGAFXLWGGGFXCFTGG 763
            VPD    GD AW ++S+ LV L + PGL   YG +V+ K  +N   M++ A   V + WA + Y ++FGD +    G      G K LI  +A+        D S +TA V +P     P    V FQ +FA IT+ +++G+V  R+   A + F  LW   V + V  +     GF    GG
Sbjct:    9 VPDG---GDTAWMLVSSALVLLMT-PGLAFFYGGMVRSKSVLNMIMMSISAMGVVTVLWALYGYSIAFGDDVGNIAGNPSQYWGLKGLIGVNAVAA------DPSTQTAAVNIPLAGTLPATVFVAFQLMFAIITVALISGAVADRLKFGAWLLFAGLWATFVYFPVAHWVFAFDGFAAEHGG 181          
The following BLAST results are available for this feature:
BLAST of EY659312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AMT_MYCTU4.005e-1633.33Probable ammonia channel OS=Mycobacterium tubercul... [more]
AMT_MYCBO4.005e-1633.33Probable ammonia channel OS=Mycobacterium bovis GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659312 ID=EY659312; Name=EY659312; organism=Citrus sinensis; type=EST; length=991bp
AGTCCTGGTNCCGGNATTCCCGGGCCCGACCCACGCGTCCGAGTAAATCA
CTGATCCATAACCATAACCACACAAGTTTACAACTACATGCTCTCTATAA
CAGCCTGTACAAAAAGAGACAAAGTACAAGAGCAAGCAATAGTATATAAT
AAGTGCAATAGCAATGGCTGCTGCTGCTGTTCCCCCGAACCCGGTCCCAA
TCGCCTACCAAGGTGGCACCTCGGCAGCAGTACCGGACTGGCTAAACAAA
GGCGACAACGCATGGCAGATGATCTCAGCAACACTCGTGGGTCTCCAAAG
CGTCCCGGGGCTCGTGATCCTCTACGGCAGCATCGTCAAGAAGAAATGGG
CAGTCAACTCAGCTTTCATGGCCCTTTACGCCTTCGCGGCCGTCGTCATT
TGTTGGGCCACCTGGGCTTACAAAATGTCCTTCGGTGACAAACTCTTGCC
CTTCTGGGGCAAAGCCGGACCTGCCTTGGGACAGAAGTTTCTCATCAAAC
AATCCGCCCTCCCCGAGACTACGCAGTTCCACGACGACGGTTCCGTTGAA
ACGGCAATGGTCTTGCCGTTTTATCCCATGGCTTCCATGGTTTGGTTCCA
GTGCGTGTTTGCTGCCATTACGTTGGTTATACTGGCCGGGTCCGTGCTGG
GGAGAATGAATATTAAGGCTNGGATGGCGTTTGTGCCGCTTTGGCTTATC
GTTTCGTACACGGTTGGGGCGTTCAGNCTGTGGGGGGGGGGGTTTNCTTG
TTTCACTGGGGGCGTCATGGACTACTNCCGTGGGCTACCGTATTCACCTC
TCCTTTTGGAATTGCCCGGCTCACTGCCCGTTACTGGGTGGGGGCCAAAA
TCCACAAAGGACAGAAAGAGATTTTCACCAATAACGTATTATGATGCTAC
CAGGGCCGGGGTTGCTTGGGATAGGAAAGGGCTTGTTTCAACGGGGGGAA
TCCGCCACCGGGAAAATTGACTCATAAAGGGCGGCCTCAAA
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