EY659303

Overview
NameEY659303
Unique NameEY659303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7645 contig Csv1_Contig7645:13..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659303 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.155e-13
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  331 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKILTERGYSFTTTX*REIVRDIKEKLCYVALDFE 738
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  N PA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT +L +++ +R  +F +      VR IKEKLCYVA D+E
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESLY---TVRTIKEKLCYVAADYE 330          
BLAST of EY659303 vs. ExPASy Swiss-Prot
Match: ARP6_DEBHA (Actin-like protein ARP6 OS=Debaryomyces hansenii GN=ARP6 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.148e-12
Identity = 64/233 (27.47%), Postives = 99/233 (42.49%), Query Frame = 1
Query:   91 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE---AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN-------TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTX*REIVRDIKEKLCYVALDFEQRM 747
            V+DNGS   KAGF+  DAP           +HQ  +        YVG+E     +    +  K P +HG + +W+  + +W +TF     N+   A   H + LTE P           QI+FE +         PA  V    + S  +      +V+DSG   +  VPI         + +L + G  L   L +I++ R Y         ++  IKEK C++A DFE+ +
Sbjct:    7 VIDNGSYNIKAGFSNQDAP----------IKHQNALSKARDGLIYVGNEYLVQTNNYSGMIFKRPYDHGHLISWETEKAVWDYTFNKASPNQELDASITH-LTLTETPFQLPQLSMNTDQIVFEEYGFNEYYRCAPASLVPWSNLGSSESKNNDFTLVVDSGYSGTWIVPIIYQNVYWKGVKKLPIGGAALNGLLREIISFRHYDIADEP--VLINTIKEKTCFMATDFEKSL 226          
BLAST of EY659303 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  331 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKILTERGYSFTTTX*REIVRDIKEKLCYVALDFEQRM 747
            T +  ++V P   P++++  PL       + KA+R ++   +F      N PA+    QAVL+LYA+ RT+GIV++ G  V   +PI  G  +    +  +      LT +L + + E   SF +      VR +KEKLCYVALD++  +
Sbjct:  182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENNISFQSLY---TVRTLKEKLCYVALDYKAEL 327          
The following BLAST results are available for this feature:
BLAST of EY659303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP8_ORYSI5.155e-1331.97Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
ARP6_DEBHA1.148e-1227.47Actin-like protein ARP6 OS=Debaryomyces hansenii G... [more]
ARP8_ARATH4.825e-1132.00Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659303 ID=EY659303; Name=EY659303; organism=Citrus sinensis; type=EST; length=807bp
CTCAAGTGACGTTTGTCCCAGTGTTCCACGATTCTCTAACGTACTAATTT
CAACAAATTCAAAATGTGTGACGAAGAAGTAGCAGCACTCGTTGTCGACA
ATGGATCCGGTATGTGCAAAGCCGGTTTTGCCGGTGATGATGCTCCCAGA
GCCGTATTCCCCTCAATCGTCGGTCGCCCAAGGCATCAGGGTGTCATGGT
TGGTATGGGACAAAAAGACAGTTATGTTGGAGATGAAGCTCAATCTAAGA
GAGGTATCCTTACCTTGAAATACCCCATCGAACACGGTATTGTCACAAAC
TGGGACGATATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCG
AGTAGCGCCAGAAGAACACCCTGTCCTCTTGACAGAAGCTCCCCTGAACC
CAAAAGCTAACAGAGAAAAGATGACCCAAATCATGTTTGAAACCTTCAAC
ACACCCGCCATGTATGTAGCTATCCAAGCTGTTCTCTCTCTGTATGCTTC
TGGTCGTACCACTGGTATCGTTCTTGATTCAGGAGATGGTGTTTCCCACA
CAGTGCCAATCTATGAAGGGTATGCCTTACCTCATGCTATCCTNCGTTTG
GACTTGGCTGGTCGTGACTTGACCGACTACCTCATGAAGATCCTTACAGA
AAGAGGNTACAGTTTCACAACCACANGCTGAAGAGAAATCGTCCGTGATA
TCAAAGAAAAATTATGTTATGTAGCTTTAGACTTTGAACAAAGAATGGGC
ACCGCTGCTTNCTCAAAGCTCCTAGAAAAATCCTATGAATGGCTGATGGG
NCAAGTA
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