EY659264

Overview
NameEY659264
Unique NameEY659264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:110..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  173 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 424
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   89 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 424
            A  E QV+      +W+E L   +ET   V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+G+  K  L + + K++
Sbjct:   65 AVNEVQVVND---SSWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  170 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 412
            ++VV+D    WCGPC+ IAP   EL++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V G+K E+L   I
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 2
Query:   68 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSN--ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 424
            PR++ +  AE G V         N+   K+   E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++G+  K  + QT+ K+L
Sbjct:   26 PRRSVVVRAEAGAV---------NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  161 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 427
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++G+  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  164 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 424
            ++Q V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVG+  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  167 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 436
            ++LVV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V G+K ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  158 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 418
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V +    L+++I +
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  158 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 436
            N  K L VV F A W   C  +   +AELAK+ P V+F+K++ + +  V+  + V ++PTF+F K  + +D++ G+   EL + + +H ++ S
Sbjct:   19 NSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTS 111          
BLAST of EY659264 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  176 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 427
            V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+G+  K  L  T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
The following BLAST results are available for this feature:
BLAST of EY659264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_LISIN3.973e-1239.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
TRXM_PEA5.189e-1237.72Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXF2_ARATH5.189e-1240.24Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_CHLRE6.776e-1234.96Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TRXM_SPIOL8.850e-1237.36Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_GRIPA8.850e-1242.70Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXF1_ARATH1.156e-1137.36Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TR548_MIMIV2.575e-1134.83Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
GLRX3_XENTR2.575e-1133.33Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_PORYE3.363e-1134.88Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659264 ID=EY659264; Name=EY659264; organism=Citrus sinensis; type=EST; length=655bp
ATCACCAATAGCAANAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGG
AGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAG
GGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCA
GAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGT
GGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAG
AAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAG
TGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGA
AAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTG
CAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTAT
AACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGC
TATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTT
GTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGG
TCTTTACAATAATTTAATTTCATATTTGGGGTAAAAAAAAAAAAAANNAA
NNAAA
back to top