EY659202

Overview
NameEY659202
Unique NameEY659202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659202_ssr388 microsatellite EY659202_ssr388:388..399. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6352 contig Csv1_Contig6352:593..1540. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSA (Photosystem I assembly protein ycf3 OS=Oryza sativa GN=ycf3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ORYNI (Photosystem I assembly protein ycf3 OS=Oryza nivara GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_GOSHI (Photosystem I assembly protein ycf3 OS=Gossypium hirsutum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_GOSBA (Photosystem I assembly protein ycf3 OS=Gossypium barbadense GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_LOTJA (Photosystem I assembly protein ycf3 OS=Lotus japonicus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.389e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFS+VANILL+IIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_HORVU (Photosystem I assembly protein ycf3 OS=Hordeum vulgare GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.389e-15
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSR+NGNFIDKTFSI+ANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRVNGNFIDKTFSIIANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ATRBE (Photosystem I assembly protein ycf3 OS=Atropa belladonna GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.389e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFID+TFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDQTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SOLLC (Photosystem I assembly protein ycf3 OS=Solanum lycopersicum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.120e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSIVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SOLBU (Photosystem I assembly protein ycf3 OS=Solanum bulbocastanum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.120e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSR NGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRTNGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_COFAR (Photosystem I assembly protein ycf3 OS=Coffea arabica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.075e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+INGNFIDKTFSIVANILLRIIPTT GE+EAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEREAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of EY659202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
YCF3_ORYSA1.829e-1590.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_ORYNI1.829e-1590.91Photosystem I assembly protein ycf3 OS=Oryza nivar... [more]
YCF3_GOSHI1.829e-1595.24Photosystem I assembly protein ycf3 OS=Gossypium h... [more]
YCF3_GOSBA1.829e-1595.24Photosystem I assembly protein ycf3 OS=Gossypium b... [more]
YCF3_LOTJA2.389e-1592.86Photosystem I assembly protein ycf3 OS=Lotus japon... [more]
YCF3_HORVU2.389e-1586.36Photosystem I assembly protein ycf3 OS=Hordeum vul... [more]
YCF3_ATRBE2.389e-1592.86Photosystem I assembly protein ycf3 OS=Atropa bell... [more]
YCF3_SOLLC3.120e-1592.86Photosystem I assembly protein ycf3 OS=Solanum lyc... [more]
YCF3_SOLBU3.120e-1592.86Photosystem I assembly protein ycf3 OS=Solanum bul... [more]
YCF3_COFAR4.075e-1592.86Photosystem I assembly protein ycf3 OS=Coffea arab... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659202 ID=EY659202; Name=EY659202; organism=Citrus sinensis; type=EST; length=942bp
CCGGNATTAAAGCCTCGACCCACGCGTCCGTTTTTTTTTTTCTGATATTT
CTACCTGATTTAATCAATGAGTTGGAACGAATCAACGGATCGGTCTATTT
TTTTTTTTATTTTTTTTAACACGTCTGCTTTTATGTTATTTTGTACTGTA
CAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGAAACGAA
TTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGGAAATTT
TATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAATAATTC
CGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCG
ATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAGAAAGAC
AATTCGGGATAGAAAAAAAAAAAAAAAAGATTATTGAAAAAATCTACGCT
TGTTGAAGGTGAAGTTTATAGATAAAACCATTCCTTCTGTCGTGTATCCC
CGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGTATTGAGCGA
AAGGTTACACCTATGGGTTCTGTATTGCAAGTCAACCCTACTACACCAGT
ACCAATAGGCGGCATAGGGGAAGAGGCGCTACGTCTAGGAATCAGCAACA
CGAAAACTTTGTTATAAACTGCCCCCTTCCTTAGCGGGATCGGGACTAAG
AAGAATGGTTGGGATAACAAACATCCATCTCGTTCGTACTGTGGATACCC
GTATAACCATCGAAGACTGTTGAAGTGATAATTNCCTGTAAATTAAAGGG
GCGTGAGAACAAGAAATTGTTGAGTTTNCGGTTTTATCTAGTACCAACAC
GCGTGATATAAAGAAAAAGCTTTGCAAAAGGTTNGCTAGAGATTNCNNTG
TAAACATTACCCCCCTTAGTTCATATGAGAATATTCAATCTT
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