EY659202

Overview
NameEY659202
Unique NameEY659202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659202_ssr388 microsatellite EY659202_ssr388:388..399. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6352 contig Csv1_Contig6352:593..1540. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SACHY (Photosystem I assembly protein ycf3 OS=Saccharum hybrid GN=ycf3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKTFSIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PLAOC (Photosystem I assembly protein ycf3 OS=Platanus occidentalis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_NYMAL (Photosystem I assembly protein ycf3 OS=Nymphaea alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_NUPAD (Photosystem I assembly protein ycf3 OS=Nuphar advena GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_MAIZE (Photosystem I assembly protein ycf3 OS=Zea mays GN=ycf3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKTFSIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_LIRTU (Photosystem I assembly protein ycf3 OS=Liriodendron tulipifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_HELAN (Photosystem I assembly protein ycf3 OS=Helianthus annuus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_DRIGR (Photosystem I assembly protein ycf3 OS=Drimys granadensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_DIOEL (Photosystem I assembly protein ycf3 OS=Dioscorea elephantipes GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRS+INGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDGAI
Sbjct:    1 MPRSQINGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGAI 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CUSRE (Photosystem I assembly protein ycf3 OS=Cuscuta reflexa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRD 344
            MPRSRINGNF+DKTFSIVANILLRIIPTT GEKEAFTYYRD
Sbjct:    1 MPRSRINGNFLDKTFSIVANILLRIIPTTSGEKEAFTYYRD 41
The following BLAST results are available for this feature:
BLAST of EY659202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
YCF3_SACHY5.322e-1588.64Photosystem I assembly protein ycf3 OS=Saccharum h... [more]
YCF3_PLAOC5.322e-1595.24Photosystem I assembly protein ycf3 OS=Platanus oc... [more]
YCF3_NYMAL5.322e-1595.24Photosystem I assembly protein ycf3 OS=Nymphaea al... [more]
YCF3_NUPAD5.322e-1595.24Photosystem I assembly protein ycf3 OS=Nuphar adve... [more]
YCF3_MAIZE5.322e-1588.64Photosystem I assembly protein ycf3 OS=Zea mays GN... [more]
YCF3_LIRTU5.322e-1595.24Photosystem I assembly protein ycf3 OS=Liriodendro... [more]
YCF3_HELAN5.322e-1595.24Photosystem I assembly protein ycf3 OS=Helianthus ... [more]
YCF3_DRIGR5.322e-1595.24Photosystem I assembly protein ycf3 OS=Drimys gran... [more]
YCF3_DIOEL5.322e-1590.91Photosystem I assembly protein ycf3 OS=Dioscorea e... [more]
YCF3_CUSRE5.322e-1595.12Photosystem I assembly protein ycf3 OS=Cuscuta ref... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659202 ID=EY659202; Name=EY659202; organism=Citrus sinensis; type=EST; length=942bp
CCGGNATTAAAGCCTCGACCCACGCGTCCGTTTTTTTTTTTCTGATATTT
CTACCTGATTTAATCAATGAGTTGGAACGAATCAACGGATCGGTCTATTT
TTTTTTTTATTTTTTTTAACACGTCTGCTTTTATGTTATTTTGTACTGTA
CAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGAAACGAA
TTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGGAAATTT
TATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAATAATTC
CGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCG
ATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAGAAAGAC
AATTCGGGATAGAAAAAAAAAAAAAAAAGATTATTGAAAAAATCTACGCT
TGTTGAAGGTGAAGTTTATAGATAAAACCATTCCTTCTGTCGTGTATCCC
CGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGTATTGAGCGA
AAGGTTACACCTATGGGTTCTGTATTGCAAGTCAACCCTACTACACCAGT
ACCAATAGGCGGCATAGGGGAAGAGGCGCTACGTCTAGGAATCAGCAACA
CGAAAACTTTGTTATAAACTGCCCCCTTCCTTAGCGGGATCGGGACTAAG
AAGAATGGTTGGGATAACAAACATCCATCTCGTTCGTACTGTGGATACCC
GTATAACCATCGAAGACTGTTGAAGTGATAATTNCCTGTAAATTAAAGGG
GCGTGAGAACAAGAAATTGTTGAGTTTNCGGTTTTATCTAGTACCAACAC
GCGTGATATAAAGAAAAAGCTTTGCAAAAGGTTNGCTAGAGATTNCNNTG
TAAACATTACCCCCCTTAGTTCATATGAGAATATTCAATCTT
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