EY659202

Overview
NameEY659202
Unique NameEY659202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659202_ssr388 microsatellite EY659202_ssr388:388..399. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6352 contig Csv1_Contig6352:593..1540. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CERDE (Photosystem I assembly protein ycf3 OS=Ceratophyllum demersum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CALFG (Photosystem I assembly protein ycf3 OS=Calycanthus floridus var. glaucus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_BUXMI (Photosystem I assembly protein ycf3 OS=Buxus microphylla GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_AMBTC (Photosystem I assembly protein ycf3 OS=Amborella trichopoda GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SORBI (Photosystem I assembly protein ycf3 OS=Sorghum bicolor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKT SIVANILL+IIPTT GEK AFTYYRDGAI
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLQIIPTTSGEKRAFTYYRDGAI 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SINAL (Photosystem I assembly protein ycf3 OS=Sinapis alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_BRAJU (Photosystem I assembly protein ycf3 OS=Brassica juncea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ARATH (Photosystem I assembly protein ycf3 OS=Arabidopsis thaliana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CUSEX (Photosystem I assembly protein ycf3 OS=Cuscuta exaltata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.078e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            M RSRINGNF+DKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFLDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SOLTU (Photosystem I assembly protein ycf3 OS=Solanum tuberosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.186e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSR NGNFIDKTFSIVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRTNGNFIDKTFSIVADILLRVIPTTSGEKEAFTYYRDG 42
The following BLAST results are available for this feature:
BLAST of EY659202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
YCF3_CERDE5.322e-1595.24Photosystem I assembly protein ycf3 OS=Ceratophyll... [more]
YCF3_CALFG5.322e-1595.24Photosystem I assembly protein ycf3 OS=Calycanthus... [more]
YCF3_BUXMI5.322e-1595.24Photosystem I assembly protein ycf3 OS=Buxus micro... [more]
YCF3_AMBTC5.322e-1595.24Photosystem I assembly protein ycf3 OS=Amborella t... [more]
YCF3_SORBI6.951e-1590.91Photosystem I assembly protein ycf3 OS=Sorghum bic... [more]
YCF3_SINAL6.951e-1590.48Photosystem I assembly protein ycf3 OS=Sinapis alb... [more]
YCF3_BRAJU6.951e-1590.48Photosystem I assembly protein ycf3 OS=Brassica ju... [more]
YCF3_ARATH6.951e-1590.48Photosystem I assembly protein ycf3 OS=Arabidopsis... [more]
YCF3_CUSEX9.078e-1592.86Photosystem I assembly protein ycf3 OS=Cuscuta exa... [more]
YCF3_SOLTU1.186e-1490.48Photosystem I assembly protein ycf3 OS=Solanum tub... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659202 ID=EY659202; Name=EY659202; organism=Citrus sinensis; type=EST; length=942bp
CCGGNATTAAAGCCTCGACCCACGCGTCCGTTTTTTTTTTTCTGATATTT
CTACCTGATTTAATCAATGAGTTGGAACGAATCAACGGATCGGTCTATTT
TTTTTTTTATTTTTTTTAACACGTCTGCTTTTATGTTATTTTGTACTGTA
CAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGAAACGAA
TTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGGAAATTT
TATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAATAATTC
CGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCG
ATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAGAAAGAC
AATTCGGGATAGAAAAAAAAAAAAAAAAGATTATTGAAAAAATCTACGCT
TGTTGAAGGTGAAGTTTATAGATAAAACCATTCCTTCTGTCGTGTATCCC
CGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGTATTGAGCGA
AAGGTTACACCTATGGGTTCTGTATTGCAAGTCAACCCTACTACACCAGT
ACCAATAGGCGGCATAGGGGAAGAGGCGCTACGTCTAGGAATCAGCAACA
CGAAAACTTTGTTATAAACTGCCCCCTTCCTTAGCGGGATCGGGACTAAG
AAGAATGGTTGGGATAACAAACATCCATCTCGTTCGTACTGTGGATACCC
GTATAACCATCGAAGACTGTTGAAGTGATAATTNCCTGTAAATTAAAGGG
GCGTGAGAACAAGAAATTGTTGAGTTTNCGGTTTTATCTAGTACCAACAC
GCGTGATATAAAGAAAAAGCTTTGCAAAAGGTTNGCTAGAGATTNCNNTG
TAAACATTACCCCCCTTAGTTCATATGAGAATATTCAATCTT
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