EY659202

Overview
NameEY659202
Unique NameEY659202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659202_ssr388 microsatellite EY659202_ssr388:388..399. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6352 contig Csv1_Contig6352:593..1540. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_WHEAT (Photosystem I assembly protein ycf3 OS=Triticum aestivum GN=ycf3 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.548e-14
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSR+NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRVNGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_POPTR (Photosystem I assembly protein ycf3 OS=Populus trichocarpa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.548e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_POPAL (Photosystem I assembly protein ycf3 OS=Populus alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.548e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PHAAO (Photosystem I assembly protein ycf3 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.548e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SOYBN (Photosystem I assembly protein ycf3 OS=Glycine max GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.022e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PHAVU (Photosystem I assembly protein ycf3 OS=Phaseolus vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.022e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_MORIN (Photosystem I assembly protein ycf3 OS=Morus indica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.022e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAF YYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFAYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SACOF (Photosystem I assembly protein ycf3 OS=Saccharum officinarum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKT SIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLQIIPTTSGEKRAFTYYRDGML 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_LOLPR (Photosystem I assembly protein ycf3 OS=Lolium perenne GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSR NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRANGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ILLOL (Photosystem I assembly protein ycf3 OS=Illicium oligandrum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            M RSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42
The following BLAST results are available for this feature:
BLAST of EY659202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
YCF3_WHEAT1.548e-1486.36Photosystem I assembly protein ycf3 OS=Triticum ae... [more]
YCF3_POPTR1.548e-1492.86Photosystem I assembly protein ycf3 OS=Populus tri... [more]
YCF3_POPAL1.548e-1492.86Photosystem I assembly protein ycf3 OS=Populus alb... [more]
YCF3_PHAAO1.548e-1492.86Photosystem I assembly protein ycf3 OS=Phalaenopsi... [more]
YCF3_SOYBN2.022e-1492.86Photosystem I assembly protein ycf3 OS=Glycine max... [more]
YCF3_PHAVU2.022e-1492.86Photosystem I assembly protein ycf3 OS=Phaseolus v... [more]
YCF3_MORIN2.022e-1492.86Photosystem I assembly protein ycf3 OS=Morus indic... [more]
YCF3_SACOF4.505e-1486.36Photosystem I assembly protein ycf3 OS=Saccharum o... [more]
YCF3_LOLPR4.505e-1486.36Photosystem I assembly protein ycf3 OS=Lolium pere... [more]
YCF3_ILLOL4.505e-1492.86Photosystem I assembly protein ycf3 OS=Illicium ol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659202 ID=EY659202; Name=EY659202; organism=Citrus sinensis; type=EST; length=942bp
CCGGNATTAAAGCCTCGACCCACGCGTCCGTTTTTTTTTTTCTGATATTT
CTACCTGATTTAATCAATGAGTTGGAACGAATCAACGGATCGGTCTATTT
TTTTTTTTATTTTTTTTAACACGTCTGCTTTTATGTTATTTTGTACTGTA
CAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGAAACGAA
TTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGGAAATTT
TATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAATAATTC
CGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCG
ATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAGAAAGAC
AATTCGGGATAGAAAAAAAAAAAAAAAAGATTATTGAAAAAATCTACGCT
TGTTGAAGGTGAAGTTTATAGATAAAACCATTCCTTCTGTCGTGTATCCC
CGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGTATTGAGCGA
AAGGTTACACCTATGGGTTCTGTATTGCAAGTCAACCCTACTACACCAGT
ACCAATAGGCGGCATAGGGGAAGAGGCGCTACGTCTAGGAATCAGCAACA
CGAAAACTTTGTTATAAACTGCCCCCTTCCTTAGCGGGATCGGGACTAAG
AAGAATGGTTGGGATAACAAACATCCATCTCGTTCGTACTGTGGATACCC
GTATAACCATCGAAGACTGTTGAAGTGATAATTNCCTGTAAATTAAAGGG
GCGTGAGAACAAGAAATTGTTGAGTTTNCGGTTTTATCTAGTACCAACAC
GCGTGATATAAAGAAAAAGCTTTGCAAAAGGTTNGCTAGAGATTNCNNTG
TAAACATTACCCCCCTTAGTTCATATGAGAATATTCAATCTT
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