EY659202

Overview
NameEY659202
Unique NameEY659202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659202_ssr388 microsatellite EY659202_ssr388:388..399. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6352 contig Csv1_Contig6352:593..1540. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_AGRST (Photosystem I assembly protein ycf3 OS=Agrostis stolonifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSR NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRANGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PLALA (Photosystem I assembly protein ycf3 OS=Plantago lanceolata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.884e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            M RSR NGNFIDKTFSIVANILL+IIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRTNGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ACOCL (Photosystem I assembly protein ycf3 OS=Acorus calamus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.884e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRIN NFIDKT +IVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINANFIDKTSTIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ACOAM (Photosystem I assembly protein ycf3 OS=Acorus americanus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.884e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRIN NFIDKT +IVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINANFIDKTSTIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CUCSA (Photosystem I assembly protein ycf3 OS=Cucumis sativus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.004e-13
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 3
Query:  222 MPRSR-INGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS  INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 43          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_STAPU (Photosystem I assembly protein ycf3 OS=Staurastrum punctulatum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.507e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+IVA+ILLRIIPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRIIPTTQREKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PHYPA (Photosystem I assembly protein ycf3 OS=Physcomitrella patens GN=ycf3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.507e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+IVA+ILLRIIPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIVADILLRIIPTTQREKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_MARPO (Photosystem I assembly protein ycf3 OS=Marchantia polymorpha GN=ycf3 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.507e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+IVA+ILLRIIPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIVADILLRIIPTTQREKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ZYGCR (Photosystem I assembly protein ycf3 OS=Zygnema circumcarinatum GN=ycf3 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.193e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+IVA+ILLR+IPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRVIPTTQREKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_SPIOL (Photosystem I assembly protein ycf3 OS=Spinacia oleracea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.193e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  240 NGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            NGNFIDKTFS+VANILL+IIPTT GEKEAFTYYRDG
Sbjct:    4 NGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 39          
The following BLAST results are available for this feature:
BLAST of EY659202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
YCF3_AGRST4.505e-1486.36Photosystem I assembly protein ycf3 OS=Agrostis st... [more]
YCF3_PLALA5.884e-1490.48Photosystem I assembly protein ycf3 OS=Plantago la... [more]
YCF3_ACOCL5.884e-1490.48Photosystem I assembly protein ycf3 OS=Acorus cala... [more]
YCF3_ACOAM5.884e-1490.48Photosystem I assembly protein ycf3 OS=Acorus amer... [more]
YCF3_CUCSA1.004e-1393.02Photosystem I assembly protein ycf3 OS=Cucumis sat... [more]
YCF3_STAPU5.507e-1283.33Photosystem I assembly protein ycf3 OS=Staurastrum... [more]
YCF3_PHYPA5.507e-1283.33Photosystem I assembly protein ycf3 OS=Physcomitre... [more]
YCF3_MARPO5.507e-1283.33Photosystem I assembly protein ycf3 OS=Marchantia ... [more]
YCF3_ZYGCR7.193e-1280.95Photosystem I assembly protein ycf3 OS=Zygnema cir... [more]
YCF3_SPIOL7.193e-1291.67Photosystem I assembly protein ycf3 OS=Spinacia ol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659202 ID=EY659202; Name=EY659202; organism=Citrus sinensis; type=EST; length=942bp
CCGGNATTAAAGCCTCGACCCACGCGTCCGTTTTTTTTTTTCTGATATTT
CTACCTGATTTAATCAATGAGTTGGAACGAATCAACGGATCGGTCTATTT
TTTTTTTTATTTTTTTTAACACGTCTGCTTTTATGTTATTTTGTACTGTA
CAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGAAACGAA
TTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGGAAATTT
TATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAATAATTC
CGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCG
ATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAGAAAGAC
AATTCGGGATAGAAAAAAAAAAAAAAAAGATTATTGAAAAAATCTACGCT
TGTTGAAGGTGAAGTTTATAGATAAAACCATTCCTTCTGTCGTGTATCCC
CGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGTATTGAGCGA
AAGGTTACACCTATGGGTTCTGTATTGCAAGTCAACCCTACTACACCAGT
ACCAATAGGCGGCATAGGGGAAGAGGCGCTACGTCTAGGAATCAGCAACA
CGAAAACTTTGTTATAAACTGCCCCCTTCCTTAGCGGGATCGGGACTAAG
AAGAATGGTTGGGATAACAAACATCCATCTCGTTCGTACTGTGGATACCC
GTATAACCATCGAAGACTGTTGAAGTGATAATTNCCTGTAAATTAAAGGG
GCGTGAGAACAAGAAATTGTTGAGTTTNCGGTTTTATCTAGTACCAACAC
GCGTGATATAAAGAAAAAGCTTTGCAAAAGGTTNGCTAGAGATTNCNNTG
TAAACATTACCCCCCTTAGTTCATATGAGAATATTCAATCTT
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