EY674756

Overview
NameEY674756
Unique NameEY674756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.307e-50
Identity = 98/142 (69.01%), Postives = 111/142 (78.17%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSL 152          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 5.641e-50
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 3
Query:  150 GRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GR+SMRKTASK+VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +A W K G+  + +  GLDYLGN  L
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEASWFKAGS-QIFSEGGLDYLGNQSL 131          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.800e-49
Identity = 99/144 (68.75%), Postives = 110/144 (76.39%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            F GKAVN+  S        R++MRKTA+K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   13 FAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.237e-49
Identity = 100/144 (69.44%), Postives = 110/144 (76.39%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            F GKAVN+  S   L    R++MRKTA+K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.095e-48
Identity = 98/141 (69.50%), Postives = 108/141 (76.60%), Query Frame = 3
Query:  102 GKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GK + L PS  EL    R +MRK+A+  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLS-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 155          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.043e-48
Identity = 97/141 (68.79%), Postives = 106/141 (75.18%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            F GKAV    S +E+    R+SMRKTA+     GSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GL YLGNP L
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLA-RNGVKFGEAVWFKKGS-QIFSEGGLQYLGNPSL 150          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.043e-48
Identity = 99/143 (69.23%), Postives = 109/143 (76.22%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            F GKAV   PS + L    R++MRKTA+K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL   +      +A W K G+  + +  GLDYLGNP L
Sbjct:   13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAGWFKAGS-QIFSDGGLDYLGNPSL 152          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.896e-48
Identity = 94/125 (75.20%), Postives = 101/125 (80.80%), Query Frame = 3
Query:  150 GRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GRI+MRKT  K    +SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 148          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.536e-47
Identity = 99/143 (69.23%), Postives = 109/143 (76.22%), Query Frame = 3
Query:  102 GKAVNLA--PSGNELSNGGRISMRKTAS--KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GK V  +  PS  EL  G R +MRK+A+  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLS-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 154          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 9.957e-47
Identity = 96/149 (64.43%), Postives = 108/149 (72.48%), Query Frame = 3
Query:  102 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPEL   +      +AVW K GA  + +  GLDYLGNP L
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSL 160          
The following BLAST results are available for this feature:
BLAST of EY674756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB22_ARATH3.307e-5069.01Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN5.641e-5078.05Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_MAIZE2.800e-4968.75Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE6.237e-4969.44Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_PEA3.095e-4869.50Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_HORVU4.043e-4868.79Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT4.043e-4869.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE6.896e-4875.20Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA1.536e-4769.23Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2B_PINSY9.957e-4764.43Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674756 ID=EY674756; Name=EY674756; organism=Citrus sinensis; type=EST; length=1005bp
CTTCTCTTGCTTACACAGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACA
CAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTTGGCCCGCAAACGGAATCAAGTTCAGTGAAAGCCGTGT
GGATCAAGGGGGGAGCCCCAAATCTTTCAACGAGGGCGGGGCTAGACTAC
TTGGGAAACCCCAAGCTTGAATCCCAAGCCCGAAAACATCTTGGCCAATC
TGGGCTTGGCCAAAGGTGGGATCTTTGAAAGGGAACCCGTAAAGGGTTAC
AAAAATAGCTGGGAGGGCCGCTAGGTTGAAAATAAAATGAACCCCATTTG
AAACCAAGGTGGGACACTTTTTAAACCCTTAGGGAGTTTTGGGCATGAGG
AACCCGGAAGGGATTTTGGTAAAAACTCAAAAGGTAAAAGAAAAAAAAAA
AATAGAAAGAGGAGGGGTAAATTATCCCACAGATTTTGGGTTTAATACTC
AATAAGAGGAATTTTGAACACAAGCAAAGGGAAGCCCTATTAAAAAAAAA
AGTGGGAAAACAAAACAATTGGAGAAAAAAAACCAGAAAATAAAAAAAAA
AAGAAAAATCGGGAGGAACACAATCCACCCCACACAAAAAAATTTTTTAA
CCCCCACAGGAAAAAAAAAGAGAAGAGAGAGACGTCCAAGGGGAGGGCGT
AAGAA
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