EY674756

Overview
NameEY674756
Unique NameEY674756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 3.784e-46
Identity = 96/137 (70.07%), Postives = 105/137 (76.64%), Query Frame = 3
Query:  120 APS-GNELSNGGRISMRKTASK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            APS  + L    RI+MRKTA+K   + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.438e-45
Identity = 91/125 (72.80%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  150 GRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GRI+MRK+A+K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 147          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.184e-45
Identity = 95/144 (65.97%), Postives = 108/144 (75.00%), Query Frame = 3
Query:  114 NLAPSGNELSNGG------RISMRK-TASKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            ++ P  N+L   G      R++MRK T  KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K GA  + +  GLDYLG+P+L
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGA-QIFSEGGLDYLGSPQL 164          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.184e-45
Identity = 95/144 (65.97%), Postives = 108/144 (75.00%), Query Frame = 3
Query:  114 NLAPSGNELSNGG------RISMRK-TASKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            ++ P  N+L   G      R++MRK T  KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K GA  + +  GLDYLG+P+L
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGA-QIFSEGGLDYLGSPQL 164          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.542e-44
Identity = 88/125 (70.40%), Postives = 95/125 (76.00%), Query Frame = 3
Query:  144 NGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL          +AVW K G+  +    GLDYLGNP L
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGS-QIFQEGGLDYLGNPNL 150          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.346e-43
Identity = 86/124 (69.35%), Postives = 96/124 (77.42%), Query Frame = 3
Query:  147 GGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+          +AVW K G+  + +  GLDYLGNP L
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGS-QIFSEGGLDYLGNPNL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.296e-43
Identity = 95/139 (68.35%), Postives = 104/139 (74.82%), Query Frame = 3
Query:  102 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            G+A+ LAPS  EL  G R+SMRKTA K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF         GLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 142          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.114e-43
Identity = 85/116 (73.28%), Postives = 91/116 (78.45%), Query Frame = 3
Query:  171 TASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL   +      +AVW K G+  + +  GLDYLGNP L
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS-RNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSL 114          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.488e-42
Identity = 89/138 (64.49%), Postives = 100/138 (72.46%), Query Frame = 3
Query:  120 APSGNEL-----SNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+          +AVW K GA  + +  GLDYLGNP L
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGA-QIFSEGGLDYLGNPNL 149          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.488e-42
Identity = 89/138 (64.49%), Postives = 100/138 (72.46%), Query Frame = 3
Query:  120 APSGNEL-----SNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+          +AVW K GA  + +  GLDYLGNP L
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGA-QIFSEGGLDYLGNPNL 149          
The following BLAST results are available for this feature:
BLAST of EY674756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_ORYSJ3.784e-4670.07Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ1.438e-4572.80Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY4.184e-4565.97Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY4.184e-4565.97Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_SILPR3.542e-4470.40Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI1.346e-4369.35Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_SOYBN2.296e-4368.35Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA5.114e-4373.28Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_ORYSJ1.488e-4264.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.488e-4264.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674756 ID=EY674756; Name=EY674756; organism=Citrus sinensis; type=EST; length=1005bp
CTTCTCTTGCTTACACAGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACA
CAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTTGGCCCGCAAACGGAATCAAGTTCAGTGAAAGCCGTGT
GGATCAAGGGGGGAGCCCCAAATCTTTCAACGAGGGCGGGGCTAGACTAC
TTGGGAAACCCCAAGCTTGAATCCCAAGCCCGAAAACATCTTGGCCAATC
TGGGCTTGGCCAAAGGTGGGATCTTTGAAAGGGAACCCGTAAAGGGTTAC
AAAAATAGCTGGGAGGGCCGCTAGGTTGAAAATAAAATGAACCCCATTTG
AAACCAAGGTGGGACACTTTTTAAACCCTTAGGGAGTTTTGGGCATGAGG
AACCCGGAAGGGATTTTGGTAAAAACTCAAAAGGTAAAAGAAAAAAAAAA
AATAGAAAGAGGAGGGGTAAATTATCCCACAGATTTTGGGTTTAATACTC
AATAAGAGGAATTTTGAACACAAGCAAAGGGAAGCCCTATTAAAAAAAAA
AGTGGGAAAACAAAACAATTGGAGAAAAAAAACCAGAAAATAAAAAAAAA
AAGAAAAATCGGGAGGAACACAATCCACCCCACACAAAAAAATTTTTTAA
CCCCCACAGGAAAAAAAAAGAGAAGAGAGAGACGTCCAAGGGGAGGGCGT
AAGAA
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