EY674756

Overview
NameEY674756
Unique NameEY674756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.315e-42
Identity = 84/125 (67.20%), Postives = 94/125 (75.20%), Query Frame = 3
Query:  144 NGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+          +AVW K G+  + +  GLDYLGNP L
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGS-QIFSEGGLDYLGNPNL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.329e-42
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 3
Query:  147 GGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+      +   +AVW K G+  + +  GLDYLGNP L
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGS-QIFSEGGLDYLGNPNL 123          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 9.645e-42
Identity = 91/147 (61.90%), Postives = 102/147 (69.39%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+          +AVW K G+  + +  GLDYLGNP L
Sbjct:   11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGS-QIFSEGGLDYLGNPNL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.260e-41
Identity = 83/124 (66.94%), Postives = 94/124 (75.81%), Query Frame = 3
Query:  147 GGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+      +   +AVW K G+  + +  GLDYLGNP L
Sbjct:   32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGS-QIFSEGGLDYLGNPNL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.665e-41
Identity = 84/125 (67.20%), Postives = 94/125 (75.20%), Query Frame = 3
Query:  153 RISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVK---AVWIKGGAPNLSTRAGLDYLGNPKL 518
            R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PEL       S VK   AVW K GA  + +  GLDYLGNP L
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLA----KSGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSL 154          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.066e-40
Identity = 83/125 (66.40%), Postives = 92/125 (73.60%), Query Frame = 3
Query:  150 GRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GRI+MRKTA+K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPEL   +      + VW K G+  + +  GL + GNP L
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLA-RNGVKFGEGVWFKAGS-QIFSEGGLSHPGNPSL 150          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.066e-40
Identity = 88/139 (63.31%), Postives = 97/139 (69.78%), Query Frame = 3
Query:  117 LAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPEL   +      +AVW K GA  + +  GLDY GNP L
Sbjct:   18 LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-KNGLKFGEAVWFKAGA-QIFSEGGLDYAGNPNL 152          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.376e-40
Identity = 85/123 (69.11%), Postives = 93/123 (75.61%), Query Frame = 3
Query:  150 GRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPEL          +AVW K GA  + +  GLDYLGNP L
Sbjct:   32 GRFSMRRTV-KAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGA-QIFSEGGLDYLGNPNL 150          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 5.292e-40
Identity = 87/133 (65.41%), Postives = 94/133 (70.68%), Query Frame = 3
Query:  132 NELSN---GGRISMRKTASKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVKAVWIKGGAPNLSTRAGLDYLGNPKL 518
            NELS     G   ++  A KS + SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PEL          +AVW K G+  +    GLDYLGNP L
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGS-QIFAEGGLDYLGNPSL 151          
BLAST of EY674756 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.912e-40
Identity = 84/125 (67.20%), Postives = 92/125 (73.60%), Query Frame = 3
Query:  153 RISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFGPQTESSSVK---AVWIKGGAPNLSTRAGLDYLGNPKL 518
            R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPEL     E + VK   AVW K G+  +    GLDYLGNP L
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELL----EKNGVKFGEAVWFKAGS-QIFAEGGLDYLGNPNL 151          
The following BLAST results are available for this feature:
BLAST of EY674756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB23_TOBAC3.315e-4267.20Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_SOLLC4.329e-4266.94Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC9.645e-4261.90Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP1.260e-4166.94Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2_PHYPA3.665e-4167.20Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE1.066e-4066.40Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_PINTH1.066e-4063.31Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI2.376e-4069.11Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU5.292e-4065.41Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB215_PEA6.912e-4067.20Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674756 ID=EY674756; Name=EY674756; organism=Citrus sinensis; type=EST; length=1005bp
CTTCTCTTGCTTACACAGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACA
CAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTTGGCCCGCAAACGGAATCAAGTTCAGTGAAAGCCGTGT
GGATCAAGGGGGGAGCCCCAAATCTTTCAACGAGGGCGGGGCTAGACTAC
TTGGGAAACCCCAAGCTTGAATCCCAAGCCCGAAAACATCTTGGCCAATC
TGGGCTTGGCCAAAGGTGGGATCTTTGAAAGGGAACCCGTAAAGGGTTAC
AAAAATAGCTGGGAGGGCCGCTAGGTTGAAAATAAAATGAACCCCATTTG
AAACCAAGGTGGGACACTTTTTAAACCCTTAGGGAGTTTTGGGCATGAGG
AACCCGGAAGGGATTTTGGTAAAAACTCAAAAGGTAAAAGAAAAAAAAAA
AATAGAAAGAGGAGGGGTAAATTATCCCACAGATTTTGGGTTTAATACTC
AATAAGAGGAATTTTGAACACAAGCAAAGGGAAGCCCTATTAAAAAAAAA
AGTGGGAAAACAAAACAATTGGAGAAAAAAAACCAGAAAATAAAAAAAAA
AAGAAAAATCGGGAGGAACACAATCCACCCCACACAAAAAAATTTTTTAA
CCCCCACAGGAAAAAAAAAGAGAAGAGAGAGACGTCCAAGGGGAGGGCGT
AAGAA
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