EY702711

Overview
NameEY702711
Unique NameEY702711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9998 contig Csv1_Contig9998:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: RECG_ECO57 (ATP-dependent DNA helicase recG OS=Escherichia coli O157:H7 GN=recG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.920e-24
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 2 
Query:  434 QHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQLPQLRAAASDLETISQRFQDYSCGLXPGEMKSDEK 787
            Q   PH L M+ATPIPRTLA+  Y D+  + I +LPPGR P+ T  I    +  + + ++    +  G + Y V  +IE+SE L + +AA +  E +     + + GL  G MK  EK
Sbjct:  417 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR-TDIIDRVRHACITEGRQAYWVCTLIEESELL-EAQAAEATWEELKLALPELNVGLVHGRMKPAEK 532

HSP 2 Score: 63.1586 bits (152), Expect = 1.920e-24
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A M PTELLA QH  +     + +  +     +  L G    K     ++ + +G + +++GTH++  E+V+F+ L L I+DEQ RFGV QR
Sbjct:  319 QVALMAPTELLAEQHANNFRNWFEPLGIE-----VGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQR 407
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: RECG_ECOLI (ATP-dependent DNA helicase recG OS=Escherichia coli (strain K12) GN=recG PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.251e-24
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 2 
Query:  434 QHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKG--YENVYKMMLDELQSGGKVYLVYPVIEQSEQLPQLRAAASDLETISQRFQDYSCGLXPGEMKSDEK 787
            Q   PH L M+ATPIPRTLA+  Y D+  + I +LPPGR P+ T  I    +    + V+   + E   G + Y V  +IE+SE L + +AA +  E +     + + GL  G MK  EK
Sbjct:  417 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITE---GRQAYWVCTLIEESELL-EAQAAEATWEELKLALPELNVGLVHGRMKPAEK 532

HSP 2 Score: 61.6178 bits (148), Expect = 3.251e-24
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A M PTELLA QH  +       +  +     +  L G    K     ++ + +G + +++GTH++  E+V+F+ L L I+DEQ RFGV QR
Sbjct:  319 QVALMAPTELLAEQHANNFRNWFAPLGIE-----VGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQR 407
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAES (Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.790e-22
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE LL+ + +   +     I L++     K+ R  ++ L++G + +V+GTH L+ + +++  L L IVDE+QRFGV  + R  +
Sbjct:  670 QVAFLVPTTILAQQHYETLLERMQDFPVE-----IQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKT 763

HSP 2 Score: 53.9138 bits (128), Expect = 4.790e-22
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLD-ELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N     N  K  L+ EL   G+V+ +Y     + E+ EQL +L   A+
Sbjct:  770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN----TNFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQRLMPDAN 856
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAEQ (Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.790e-22
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE LL+ + +   +     I L++     K+ R  ++ L++G + +V+GTH L+ + +++  L L IVDE+QRFGV  + R  +
Sbjct:  670 QVAFLVPTTILAQQHYETLLERMQDFPVE-----IQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKT 763

HSP 2 Score: 53.9138 bits (128), Expect = 4.790e-22
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLD-ELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N     N  K  L+ EL   G+V+ +Y     + E+ EQL +L   A+
Sbjct:  770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN----TNFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQRLMPDAN 856
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAS1 (Transcription-repair-coupling factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mfd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.372e-21
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     + L++     K+ +  ++ L++G + +V+GTH L+ + +++  L L IVDE+QRFGV  + R  S
Sbjct:  671 QVAFLVPTTILAQQHYETLIERMQDFPIE-----VQLISRFRTTKEVKETKEGLKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKS 764

HSP 2 Score: 53.5286 bits (127), Expect = 1.372e-21
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLD-ELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N     N  K  L+ EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  771 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN----TNFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 857
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAAW (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MW2) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAAS (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MSSA476) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAAR (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MRSA252) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAAN (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain N315) GN=mfd PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAAM (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=mfd PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
The following BLAST results are available for this feature:
BLAST of EY702711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RECG_ECO571.920e-2436.44ATP-dependent DNA helicase recG OS=Escherichia col... [more]
RECG_ECOLI3.251e-2437.50ATP-dependent DNA helicase recG OS=Escherichia col... [more]
MFD_STAES4.790e-2237.37Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAEQ4.790e-2237.37Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAS11.372e-2135.35Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAW1.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAS1.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAR1.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAN1.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAM1.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-D06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702711 ID=EY702711; Name=EY702711; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGTAAAAGTTACTTTGTTCGAGGTCTTCTCATTTGGATAG
TTTAGTTCATAATGATGGTCGTCAGATTCAGTGTCTTTTCTTCAGGCAGC
TTTTATGGTTCCAACTGAGTTGCTTGCAACCCAGCACTATGAGCACTTGC
TTAAATTGCTAGATAATATGGAGGAGGACAAGCACAAACCTAAAATTGCC
TTACTAACAGGTTCAACACCAGTAAAACAATCCCGGATGATCCGTAAGGA
TCTTCAAACTGGAGATATCACTCTGGTCATTGGAACCCATAGTTTAATTG
CTGAAAAAGTTGAATTTTCTGCTTTACGCCTCGCTATTGTGGATGAACAA
CAACGCTTTGGTGTGGTACAGAGAGGCAGATTTAACAGTAAGGTATGGCA
ATGGTTAATTCAGACGGGTCTCCAAAAGATGATCAACATATGGCTCCTCA
TGTTCTTGCCATGTCAGCCACTCCTATCCCAAGAACGCTTGCTTTGGCAT
TATATGGGGATATGTCCTTAACACAGATAACTGACTTACCTCCAGGAAGG
ATACCTATTAAGACCTACATCATTGAAGGAAATGAGAAGGGCTATGAGAA
TGTGTACAAGATGATGCTTGACGAACTGCAATCAGGTGGAAAAGTGTACC
TTGTGTATCCTGTCATTGAACAATCTGAGCAGTTGCCCCAGCTCCGTGCT
GCTGCTTCAGATCTTGAAACTATATCTCAAAGATTTCAGGATTACAGCTG
CGGGTTGNTGCCTGGGGAAATGAAGAGTGACGAAAAGATGAGGTTTTAGA
ACGGTCAGATCTGGCGAGACACTATATTGCTTTCCACTAAGTAATTGAAA
TGGTGGTGATGGTCCCAAG
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