EY702711

Overview
NameEY702711
Unique NameEY702711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9998 contig Csv1_Contig9998:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_MYCTU (Transcription-repair-coupling factor OS=Mycobacterium tuberculosis GN=mfd PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.593e-14
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q A +VPT LLA QH +   + +           I  L+  T   +SR +   L  G + +VIGTH L+   V +  L L +VDE+QRFGV  +    S
Sbjct:  699 QVAVLVPTTLLADQHLQTFGERMSGFPVT-----IKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKS 792          

HSP 2 Score: 44.669 bits (104), Expect = 1.593e-14
Identity = 34/110 (30.91%), Postives = 51/110 (46.36%), Query Frame = 2
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQ--------SEQLPQLRAAASD-------LETISQRF 736
            VL MSATPIPRTL ++L G   ++ I   P  R P+ TY+   ++K    +   +  EL   G+ + V+  +           E +P+ R   +        LET  QRF
Sbjct:  799 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK---QIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRF 905          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_MYCBO (Transcription-repair-coupling factor OS=Mycobacterium bovis GN=mfd PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.593e-14
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q A +VPT LLA QH +   + +           I  L+  T   +SR +   L  G + +VIGTH L+   V +  L L +VDE+QRFGV  +    S
Sbjct:  699 QVAVLVPTTLLADQHLQTFGERMSGFPVT-----IKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKS 792          

HSP 2 Score: 44.669 bits (104), Expect = 1.593e-14
Identity = 34/110 (30.91%), Postives = 51/110 (46.36%), Query Frame = 2
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQ--------SEQLPQLRAAASD-------LETISQRF 736
            VL MSATPIPRTL ++L G   ++ I   P  R P+ TY+   ++K    +   +  EL   G+ + V+  +           E +P+ R   +        LET  QRF
Sbjct:  799 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK---QIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRF 905          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_HELPY (Transcription-repair-coupling factor OS=Helicobacter pylori GN=mfd PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.920e-14
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q+A +VPT LLA QH+E L    +N        K+A L       +   + K ++ G +  +IGTH+++  K  F  L L +VDE+ +FGV Q+
Sbjct:  535 QSALVVPTTLLAHQHFETLRARFENF-----GVKVARL--DRYASEKNKLLKAVELGQVDALIGTHAILGAK--FKNLGLVVVDEEHKFGVKQK 619          

HSP 2 Score: 45.8246 bits (107), Expect = 5.920e-14
Identity = 24/70 (34.29%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  449 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY 658
            H L+MSATPIPRTL +AL     ++ +   P  R P +T++ E N+   E + +++  EL+  G+++ ++
Sbjct:  630 HFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKND---ELLKEIIYRELRRNGQIFYIH 696          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_BORBU (Transcription-repair-coupling factor OS=Borrelia burgdorferi GN=mfd PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.359e-12
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q   + PT +LA QH+    K   N        KI +L+          I K+L++G I ++IGTH ++++K     L L I+DE+QRFGV ++
Sbjct:  633 QVIVLSPTTILAEQHFNTFKKRFKNFPI-----KIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKEK 721          

HSP 2 Score: 37.7354 bits (86), Expect = 1.359e-12
Identity = 26/80 (32.50%), Postives = 43/80 (53.75%), Query Frame = 2
Query:  455 LAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQLPQL 694
            LA+SATPIPR+L ++L     ++ +   P  R+ I+ Y+   +E   ++  +    EL   G+V+LV   IE+   L  L
Sbjct:  734 LALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELLIKHAIE---SELSRDGQVFLVNHNIEELYYLKTL 810          
The following BLAST results are available for this feature:
BLAST of EY702711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
MFD_MYCTU1.593e-1435.35Transcription-repair-coupling factor OS=Mycobacter... [more]
MFD_MYCBO1.593e-1435.35Transcription-repair-coupling factor OS=Mycobacter... [more]
MFD_HELPY5.920e-1435.11Transcription-repair-coupling factor OS=Helicobact... [more]
MFD_BORBU1.359e-1234.04Transcription-repair-coupling factor OS=Borrelia b... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-D06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702711 ID=EY702711; Name=EY702711; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGTAAAAGTTACTTTGTTCGAGGTCTTCTCATTTGGATAG
TTTAGTTCATAATGATGGTCGTCAGATTCAGTGTCTTTTCTTCAGGCAGC
TTTTATGGTTCCAACTGAGTTGCTTGCAACCCAGCACTATGAGCACTTGC
TTAAATTGCTAGATAATATGGAGGAGGACAAGCACAAACCTAAAATTGCC
TTACTAACAGGTTCAACACCAGTAAAACAATCCCGGATGATCCGTAAGGA
TCTTCAAACTGGAGATATCACTCTGGTCATTGGAACCCATAGTTTAATTG
CTGAAAAAGTTGAATTTTCTGCTTTACGCCTCGCTATTGTGGATGAACAA
CAACGCTTTGGTGTGGTACAGAGAGGCAGATTTAACAGTAAGGTATGGCA
ATGGTTAATTCAGACGGGTCTCCAAAAGATGATCAACATATGGCTCCTCA
TGTTCTTGCCATGTCAGCCACTCCTATCCCAAGAACGCTTGCTTTGGCAT
TATATGGGGATATGTCCTTAACACAGATAACTGACTTACCTCCAGGAAGG
ATACCTATTAAGACCTACATCATTGAAGGAAATGAGAAGGGCTATGAGAA
TGTGTACAAGATGATGCTTGACGAACTGCAATCAGGTGGAAAAGTGTACC
TTGTGTATCCTGTCATTGAACAATCTGAGCAGTTGCCCCAGCTCCGTGCT
GCTGCTTCAGATCTTGAAACTATATCTCAAAGATTTCAGGATTACAGCTG
CGGGTTGNTGCCTGGGGAAATGAAGAGTGACGAAAAGATGAGGTTTTAGA
ACGGTCAGATCTGGCGAGACACTATATTGCTTTCCACTAAGTAATTGAAA
TGGTGGTGATGGTCCCAAG
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