EY702112

Overview
NameEY702112
Unique NameEY702112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 9.700e-61
Identity = 139/248 (56.05%), Postives = 162/248 (65.32%), Query Frame = 3
Query:  132 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGRLVGPPE*QVTFNWVYA*SCTLVN 851
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLV H++KNFM LPNIK PLILGIWG    GKSF  ELVFAKMGITP MMS  ++      E    +      A +L    KG+M C  I+DL+AG GR+ G  +  V    V A   TL+N
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLI--KKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNA---TLMN 252          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 3.686e-60
Identity = 137/244 (56.15%), Postives = 161/244 (65.98%), Query Frame = 3
Query:  132 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGRLVGPPE*QVTFNWVYA*SCTLVN 851
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLV HI+KNFM LPNIK PLILGIWG    GKSF  ELVFAKMGI P MMS  ++      E    +      A ++    KG+M C  I+DL+AG GR+ G  +  V    V A   TL+N
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII--KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA---TLMN 247          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.549e-58
Identity = 132/243 (54.32%), Postives = 156/243 (64.20%), Query Frame = 3
Query:  132 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGRLVGPPE*QVTFNWVYA*SCTLVN 851
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+ H+ KNFM LPNIK PLILGIWG    GKSF  ELVFAKMGI P MMS    G++      P  +             KG+M C  I+DL+AG GR+ G  +  V    V A   TL+N
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA---GELESGNGEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA---TLMN 243          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.508e-56
Identity = 130/243 (53.50%), Postives = 156/243 (64.20%), Query Frame = 3
Query:  132 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGRLVGPPE*QVTFNWVYA*SCTLVN 851
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLV H++KNFM LPNIK PLILGIWG    GKSF  ELVFAKMGI P MMS  ++      E    +      A ++    KG+M C  I+DL+AG GR+ G  +  V    V A   TL+N
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMI--KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA---TLMN 246          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.357e-54
Identity = 126/252 (50.00%), Postives = 155/252 (61.51%), Query Frame = 3
Query:   99 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGRLVGPPE*QVTFNWVYA*SCTLVN 851
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLV HITKNF+ LPNIK PLILG+WG    GKSF  ELVFAK+GI P MMS  ++      E    +      A +L    KG+M    I+DLE G GR+ G  +  V    V A   TL+N
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLI--AKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNA---TLMN 254          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.906e-32
Identity = 85/201 (42.29%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  192 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGRL 785
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+  HI KNFM LP IK PLILGIWG    GK+F   L + K+GI P +MS  ++      E    + +    A ++    KGRM    I+DL+AG GR+
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDII--KKGRMCSLFINDLDAGAGRM 210          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.016e-17
Identity = 70/170 (41.18%), Postives = 75/170 (44.12%), Query Frame = 3
Query:  285 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKG---RMGCPPIDDLEAGPGRL 785
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                     PLILGIWG               KMGI P MMS                      AG L     G   +M C  I+DL+AG GR+
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLRV------------------------------------PLILGIWG--------------GKMGINPIMMS----------------------AGELESGNAGEPAKMCCLFINDLDAGAGRV 96          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.717e-15
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  462 YIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGR 782
            YIAP F+DKL  HITKNF+ LP ++ PLILGI G    GK+F  EL F KMG+  T++SG ++ + P    P  +I             +G+M    I+DL+AG GR
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGEL-ESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGR 109          
BLAST of EY702112 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  462 YIAPAFMDKLVAHITKNFMCLPNIKGPLILGIWGS*RTGKSFPWELVFAKMGITPTMMSGRKIGKVPRLEKPPNVISEMVPAGNLTFSGKGRMGCPPIDDLEAGPGR 782
            YIAP F+DKL  HITKNF+ +P ++ PLILGI G    GK+F  EL F KMGI  T++SG ++ + P    P  +I             +G+M    I+DL+AG GR
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGEL-ESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGR 109          
The following BLAST results are available for this feature:
BLAST of EY702112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_MAIZE9.700e-6156.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.686e-6056.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.549e-5854.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU5.508e-5653.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.357e-5450.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.906e-3242.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.016e-1741.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC4.717e-1543.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.161e-1543.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702112 ID=EY702112; Name=EY702112; organism=Citrus sinensis; type=EST; length=871bp
CACGCACTCTTCGCATTGCTTCGCTTTCCTTTGCCTGCATTACAGCGTGA
CCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATGGC
TGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCC
CAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATC
CCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGA
TGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACGACG
AATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCT
CTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTC
TTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGA
TCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGCTCAC
ATCACCAAGAACTTCATGTGCCTGCCCAACATCAAGGGTCCTCTCATCTT
GGGTATTTGGGGGAGCTAACGGACAGGAAAATCCTTCCCATGGGAGCTTG
TTTTCGCCAAAATGGGCATCACCCCAACTATGATGAGCGGCCGAAAAATT
GGAAAAGTGCCTAGGCTGGAAAAACCCCCTAATGTGATCAGCGAAATGGT
ACCGGCGGGGAATCTGACCTTTTCTGGGAAGGGAAGAATGGGCTGCCCCC
CGATCGATGATCTTGAAGCAGGACCTGGTCGCTTGGTGGGCCCCCCCGAG
TGACAGGTAACGTTCAATTGGGTATATGCCTAGTCGTGTACGTTGGTGAA
TCCCAAGTTGGGGGCGACCCC
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