EY702096

Overview
NameEY702096
Unique NameEY702096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702096 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 42/93 (45.16%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  362 GQPPLLTKTYEMIDDLSTEAIVSWSITHNSCCVRDSHQISTTLHTK*C*HSN*STFIRQLNTYGSIKVDPDTCEFADEG*LARQTLLLITIQR 640
            G  P + KTY M++D  T+ ++ W   +NS  V D    S TL      H+N S+F+RQLNTYG  KVDPD  EFA    L  QT LL  I R
Sbjct:    8 GAAPFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVR 100          
BLAST of EY702096 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.314e-12
Identity = 45/100 (45.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  359 AGQPPLLTKTYEMIDDLSTEAIVSWS-ITHNSCCVRDSHQISTTLHTK*C*HSN*STFIRQLNTYGSIKVDPDTCEFADEG*LARQTLLLITIQRTRHVA 655
            A   P L KT+EM++D +T+A+VSW     NS  V D H  +  L      H+N S+F+RQLNTYG  KV  D  EFA+E  L  Q  LL  I+R R  A
Sbjct:   39 AAVAPFLVKTFEMVEDPATDAVVSWGGAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRRRGA 138          
BLAST of EY702096 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  338 PLEGMHDAGQPPLLTKTYEMIDDLSTEAIVSWSITHNSCCVRDSHQISTTLHTK*C*HSN*STFIRQLNTYGSIKVDPDTCEFADEG*LARQTLLLITIQRTR 646
            PL+ +     PP L+KT++++DD + + ++SW +T  S  V D  + +  +  +   H+N S+F+RQLNTYG  K+D D  EFA+E  L  +  LL  I R R
Sbjct:   44 PLDILQGNPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRR 146          
BLAST of EY702096 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 44/107 (41.12%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  335 HPLEGMHDAGQ---PPLLTKTYEMIDDLSTEAIVSWSITHNSCCVRDSHQISTTLHTK*C*HSN*STFIRQLNTYGSIKVDPDTCEFADEG*LARQTLLLITIQRTR 646
            H L+   D G     P + KT+ M+ D ST A+V W    N+  V D    S  L      H N ++F+RQLNTYG  KVDPD  EFA E  L  Q  LL  I R +
Sbjct:    9 HQLQAAGDGGPGAVAPFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK 115          
BLAST of EY702096 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 42/92 (45.65%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  371 PLLTKTYEMIDDLSTEAIVSWSITHNSCCVRDSHQISTTLHTK*C*HSN*STFIRQLNTYGSIKVDPDTCEFADEG*LARQTLLLITIQRTR 646
            P + KTY+M+ D  T+A+V W   +NS  V D    S  L      H N S+F+RQLNTYG  KV PD  EFA E  L  QT LL  I R +
Sbjct:   26 PFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRK 117          
BLAST of EY702096 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  371 PLLTKTYEMIDDLSTEAIVSWSITHNSCCVRDSHQISTTLHTK*C*HSN*STFIRQLNTYGSIKVDPDTCEFADEG*LARQTLLLITIQRTRHV 652
            P L KTY+++DD +T+ ++SW+    +  V  + + +  L  K   H+N S+F+RQLNTYG  K+ PD  EFA+E     Q  LL  I+R + V
Sbjct:    9 PFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTV 102          
BLAST of EY702096 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  359 AGQPPLLTKTYEMIDDLSTEAIVSWSITHNSCCVRDSHQISTTLHTK*C*HSN*STFIRQLNTYGSIKVDPDTCEFADEG*LARQTLLLITIQRTR 646
            AG PP LTKTY M++D ST+  +SW+ +  +  V    + +  L  K   HSN S+F+RQLNTYG  KV  D  EFA++     +  LL  IQR +
Sbjct:    6 AGTPPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRK 101          
The following BLAST results are available for this feature:
BLAST of EY702096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HFC2B_ORYSJ1.006e-1245.16Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFA6A_ORYSJ1.314e-1245.00Putative heat stress transcription factor A-6a OS=... [more]
HSFA3_ARATH2.242e-1237.86Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HFC1B_ORYSJ1.898e-1141.12Heat stress transcription factor C-1b OS=Oryza sat... [more]
HFC1A_ORYSJ4.228e-1145.65Heat stress transcription factor C-1a OS=Oryza sat... [more]
HSF24_SOLPE5.522e-1139.36Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB2A_ORYSJ7.212e-1142.71Heat stress transcription factor B-2a OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-A08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702096 ID=EY702096; Name=EY702096; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGGATGATCTCTGTATCTGGAACCTTCTCTTGCGCACCCTC
TGTATAATCCTAAGTTCTCTGCCACAGTTAGACTCTACATCTCAAATCTC
CCCTGGAGATACTTGACGGAAGAATTACAAACGAAGTGCGTAAACATCTC
AAAGTTCGTAGTAGAGCCGTGACTGAAAGCTCGCTTAATTAATAGCTCTC
TGTTTAGAACACTATATTAGCATTAACTATGGAGGGAGTGAGGGGGAATG
AAGAAGAGACAGTGACGTACGGCTGCGACGACAGCTACTGCTGGGTCAAG
GACATCTACTTCGTCGGCTCCCTAGTTTATGCAGCATCCGCTGGAGGGTA
TGCACGATGCGGGCCAGCCTCCGCTTCTGACGAAGACCTACGAAATGATA
GATGATCTATCAACGGAGGCGATCGTTTCCTGGAGCATAACTCACAATAG
CTGCTGTGTGAGGGACTCTCACCAGATCTCTACTACTTTGCATACGAAAT
AGTGCTAGCACAGTAATTGATCTACCTTCATTCGCCAACTGAACACTTAT
GGGTCTATAAAGGTTGATCCTGATACATGCGAATTCGCCGATGAAGGATG
ATTGGCAAGGCAGACTCTTCTACTGATTACGATACAGAGAACGAGACACG
TCGCACCGAGTATGCAACAGGCAACGAAGATAAGCTTGTATTGTCGAGAG
ACGATATGGACTGGATCGTGAGATTGAAACATTTAGACGGTACTATACGT
GTCCATCGGCATAATGGTTATGCTGATGCAACATCAGATGCCACAGGAGC
ACTACTCGNAGAAATGGACGATGGGTTATTACATCTCGACAGGAAGCAGT
GGCCATGATGACATCCCTTGGGCAAGCGTC
back to top