EY702094

Overview
NameEY702094
Unique NameEY702094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.005e-15
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M TPA  RLM DF  L++DPP G+ GAP +N+I+  NAVI      P  D G                     +S M HP +YADG IC DIL    SP YDV++ILTSI
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFED-GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.005e-15
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M TPA  RLM DF  L++DPP G+ GAP +N+I+  NAVI      P  D G                     +S M HP +YADG IC DIL    SP YDV++ILTSI
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFED-GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.005e-15
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M TPA  RLM DF  L++DPP G+ GAP +N+I+  NAVI      P  D G                     +S M HP +YADG IC DIL    SP YDV++ILTSI
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFED-GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.126e-15
Identity = 48/110 (43.64%), Postives = 59/110 (53.64%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M TP+  RLM DF  L++DPPAG+ GAP +++I+   A+I      P  DG                      +S M HP +YADG IC DIL    SP YDVAAILTSI
Sbjct:    1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKF-ISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.340e-14
Identity = 48/110 (43.64%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M T A  RLM DF  L+ DPPAGI GAP +N+I++  AVI       + +G                      +S M HP +YADG IC DIL    SP YD+AAILTSI
Sbjct:    1 MSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVI-FGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 9.668e-14
Identity = 47/110 (42.73%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M T A  RLM DF  ++QDPPAG+  +P  ++++L NAVI      P  DG                      VS M HP +YA+G +C DIL    SP YDVAAILTSI
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKF-VSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.184e-13
Identity = 46/110 (41.82%), Postives = 57/110 (51.82%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M TP+  RL+ DF  L  DPP GI GAP  +++++ NAVI      P  DG                      +S M HP +YA+G +C DIL    SP YDVAAILTSI
Sbjct:    1 MSTPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKF-LSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.823e-12
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M TPA  RLM DF  ++QDPP+G+  +P  ++++  NAVI      P  D G                     +S M HP +YA G +C DIL    SP YDV++ILTS+
Sbjct:    1 MSTPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFED-GTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSV 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.305e-12
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M T A  RLM DF  ++ DPPAG+  +P  ++++  NAVI      P  DG                      +S M HP +YA+G +C DIL    SP YDVAA+LTSI
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKF-ISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSI 109
[Close]
BLAST of EY702094 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.928e-12
Identity = 43/110 (39.09%), Postives = 55/110 (50.00%), Query Frame = 3 
Query:  171 MLTPATNRLMMDFHTLRQDPPAGIIGAPQDNSIVLGNAVISLSG*YPMRDGGXXXXXXXXXXXXXXXXXXXXSVSPMLHPYIYADGIICSDILHYLRSPFYDVAAILTSI 500
            M T A  RLM DF  ++ DPPAG+  +P  ++++  NAVI      P  DG                      +S M HP +YA G +C DIL    SP YDVAA+LTSI
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKF-ISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSI 109
The following BLAST results are available for this feature:
BLAST of EY702094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
UBE2B_MOUSE3.005e-1544.55Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN3.005e-1544.55Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN3.005e-1544.55Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC1_CAEEL5.126e-1543.64Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_DICDI4.340e-1443.64Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_SCHPO9.668e-1442.73Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_USTMA8.184e-1341.82Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_CANAL1.823e-1238.18Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_TRIHA5.305e-1239.09Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NEUCR6.928e-1239.09Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-A04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702094 ID=EY702094; Name=EY702094; organism=Citrus sinensis; type=EST; length=915bp
CCACGCGTCCGGAACTCTCTCTCACTTGTATCTCTGATCCATTGACTACC
ATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCTAGAAA
TTCTCTCTGCCATTCTGATGCTTTTACTGCCATCGACGCTACTTGCCGCG
TCAGCTCTTAAGCCGCGAGAATGCTCACTCCTGCAACGAACAGATTGATG
ATGGATTTTCATACGTTACGACAAGATCCTCCGGCTGGCATTATTGGTGC
TCCTCAAGACAACAGTATTGTGCTTGGGAATGCTGTCATATCTCTGTCTG
GATGATACCCCATGCGTGATGGAGGCACTTCTACATTGACTCTTACGGTC
ACATAGGATTATCCTGATACGACACCGACGGTGACCTCTGTCTCTCCAAT
GCTACATCCCTATATTTATGCAGATGGAATCATTTGCTCGGACATTCTAC
ATTATCTCAGGAGTCCATTTTACGATGTAGCAGCAATACTCACGTCGATT
CATGTCATTGCTCTTTGACGCAGATCCAGACTCTCCTGTAGATTCCGACG
CATTCCGCATGTGTACCGACAACAACCGCGAATACGATAGGACCATACTG
GTAGAACTGTTGTTCATACTTGGACTGCTGACTAATGGCAACTCTGTAGG
ATCGCAAGGAACTTCGAATTCTGCCGATGGCTTGGTTCTGACTACCCTGA
AGAGTCCAAGGCCCGGGGGGTGACCTCGTGCATGTTTTTCGTGGGCTCCG
CCTTTGATGATGGATGCTCGCCTCCTATGGTAGTTCTCTCCTGGGGGACA
TTGAGCTCAATCGGAATTTTTCATGGTATTTACTCAGCTTGGGCCTGGCT
GAACTATATGAAGAACTATCGCGTTGGGACAAAAAAAAAAAAAAAAAAGG
CTTTTTTCAACTGTA
back to top