DR406105

Overview
NameDR406105
Unique NameDR406105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406105 vs. ExPASy Swiss-Prot
Match: RPN8_ASHGO (26S proteasome regulatory subunit RPN8 OS=Ashbya gossypii GN=RPN8 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAE-----------------LIKAFSVKTNDMMLVIYLSSLIRSVIA 265
            L+  +T +L +L+GL  +LR+I  YLD V   +LP NH IL  LQDVFNLLPNL   +                 L KA +VKTND ++VIY+S+L+R++IA
Sbjct:  186 LSLRLTNQLKSLQGLQRKLRDIVAYLDKVNSGQLPANHIILGKLQDVFNLLPNLGSPDEEAPATKKDDVLASSNTLQKALTVKTNDELMVIYISNLMRAIIA 287          
The following BLAST results are available for this feature:
BLAST of DR406105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RPN8_ASHGO2.988e-1445.1026S proteasome regulatory subunit RPN8 OS=Ashbya g... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L21 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406105 ID=DR406105; Name=DR406105; organism=Citrus sinensis; type=EST; length=554bp
GGGCAGTACACTTGCAAATGAGGTCACTGGAAAACTTACAGCCCTAAAGG
GTCTGGATGCTCGTTTGCGTGAGATCCGTGGTTACCTTGACCTTGTTATT
GATGAGAAACTTCCGTTGAATCACGAGATACTTTACCATTTACAGGATGT
GTTTAACCTTTTACCGAATCTGAATGTGGCTGAATTAATCAAGGCCTTTT
CAGTAAAAACAAATGATATGATGTTGGTTATATATCTTTCGTCCCTCATC
CGGAGTGTTATTGCACTACATAACTTAATCAATAACAAGATTTTGAACAA
AGAACACGAAAAGACTGAGGACGCAAAGCCAACGGCAGTTCCAACTGCCA
GTTCAAGTTAAAATCAAGTTTGTTGTGCTTTGGGGCTTTCAGCCATTACC
GAACTGGGGCATTTGAAAATGGAAGAGAGGGGTGGGGGTTGGGGGGAGTG
TGTGGTTAGGTGGAGCCAGTTANNNGTCGANNNNNAGAGGTTACATTTGC
CGACAGTTTTCTCCTACTGAGCATCATCAGAGATAACTGTGCTCCAAAAA
GCTT
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