DR406094

Overview
NameDR406094
Unique NameDR406094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 50/139 (35.97%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  241 SQMASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            S +A  R+ +E K  +KD P    A P  +     ++ + +  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   ++  D
Sbjct:    2 SGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQD 140          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  232 LRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            +R  Q    +IN + K+L  D   S     V +++F W+  I GP +S +    F + I    DYP+  PKV F T + H N+N  G ICL+ILK+  W+ +L I  ++ SI  LL  PNP+DP   E+A +Y+ D
Sbjct:    6 IRRIQNEYNKINND-KNLYAD---SFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRND 137          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 45/135 (33.33%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            + +  A  RI K++ +L    P +C+   P  +D+ +++  I+ P +  +  G F+ +     +YP +PPKV   T+V+HPNI+ +G++CL+IL+E W+P L I+ ++  +  L  +PNP+DPL  E A + +T+
Sbjct:   22 KKASAAQLRIQKDINELNL--PNTCATDFPDPNDLLNFKL-IISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTN 153          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  217 FSDGLLRNSQMASKRINKELKDLQKD-----PPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM 624
            FS    ++S+  SKR N      QKD      P  C+      +D+ ++  +I  P+D  +    F  +I+ P  YP+ PPKV   T V+HPNI+  G +CL+IL++ W P L I  V+  + +L  +PNPDDPL  + A +
Sbjct:   60 FSLKTKQSSESGSKRANPAELRAQKDIDEMEVPTGCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQL 200          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  226 GLLRNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            G  + +  A  RI K++ +L    P +C       DD+ +++  I  P +  + GG F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +
Sbjct:   22 GSSKKASAAQLRIQKDINELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.500e-18
Identity = 53/126 (42.06%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  241 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKV-----AFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 591
            SQ    RI +++  + K+PP      P   DM    A I GP D+P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ NP
Sbjct:   69 SQQCILRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTE-NP 193          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.500e-18
Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  226 GLLRNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            G  + +  A  RI K++ +L    P +C       DD+ +++  I  P +  + GG F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +
Sbjct:   22 GSSKKASAAQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  247 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTD 636
            MAS    +E+ D+ K   +      V DD+  +  T  GP+DS + GGV+ + +  P  YP+K P V F  K++HPN++ S+G++CLD++ + WSP   +  V  S +  LL  PNP DP   E A +   D
Sbjct:    1 MASPSKRREM-DMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRD 131          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  226 GLLRNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            G  + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +
Sbjct:   22 GSSKKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  226 GLLRNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            G  + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +
Sbjct:   22 GSSKKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
The following BLAST results are available for this feature:
BLAST of DR406094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UBC9_PAGMA1.571e-1835.97SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC1_MIMIV2.052e-1837.50Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC12_DROME2.052e-1833.33NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_DICDI2.052e-1835.21NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_XENTR2.680e-1834.78NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBE2Z_DANRE3.500e-1842.06Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]
UBC12_XENLA3.500e-1834.78NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC6_ARATH5.970e-1836.36Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC12_MOUSE5.970e-1834.06NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN5.970e-1834.06NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406094 ID=DR406094; Name=DR406094; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTAAATTTCNNAATTATTTCATTAATTTTTAAAATTCCCCA
ATAATCACGCCTTCGTCCCTGATTTTGGTTTGAATTTATAAATAAAGGTT
GTTGCTTCAAATCTGTCGGTACAATTTTTGTACTTTTTAGAATTAGGGTT
AGGGTTTGTGATCGTGTTTTCGATTCTGTTTGCTTTTAAGATATAACCCT
CGAAGTACGGCACTGTTTCTCTGATGGTTTGTTGAGAAATTCCCAGATGG
CTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGACCCTCCT
GCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAGC
AACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTG
TATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCC
TTCCGTACTAAGGTTTTCCACCCTAACATCAATAGCAATGGTAGCATCTG
TCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGG
TACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCCA
CTTGTGCCTGAGATTGCTCACATGTACAAGACTGACA
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