DR406034

Overview
NameDR406034
Unique NameDR406034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406034_ssr635 microsatellite DR406034_ssr635:635..646. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:428..1105. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.986e-46
Identity = 93/159 (58.49%), Postives = 110/159 (69.18%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXX-RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            MS+IPS FG RR+NV +P SLD+WDPF  +             +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVL VT            +I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 94/158 (59.49%), Postives = 107/158 (67.72%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            MSLIPSIFGG R+NVFDP SLD+WDPF  F             E S F N R+DWKET +AHV KAD+PGL+           R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVL VT             IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSA----ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.287e-45
Identity = 95/157 (60.51%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXX---------RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR+NVFDP SLD+WDPFDGF                      ET+ FA ARIDWKETP+AHVFKAD+PGL+          G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVL VT            +I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.196e-45
Identity = 99/161 (61.49%), Postives = 113/161 (70.19%), Query Frame = 3
Query:   75 MSLIPSIFGGRR-TNVFDPVSLDVWDPFD--GFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            MSLIP IFG RR T+VFDP S+DV+DPF   GF             ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVL VT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSG-------ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.389e-45
Identity = 92/157 (58.60%), Postives = 105/157 (66.88%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXX---------RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR+NVFDP SLD+WDPFDGF                      ET+ FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVL VT            +I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.859e-44
Identity = 86/139 (61.87%), Postives = 102/139 (73.38%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAV 491
            MS+IPS F  +R+N+FDP SLD WDPF G             RET+   NARIDWKETP+AHV KADLPG++          GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVL V
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIISTEPA------RETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.428e-44
Identity = 97/161 (60.25%), Postives = 113/161 (70.19%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTN-VFDPVSLDVWDPFD--GFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            MSLIP IFG RR++ +FDP S+DV+DPF   GF             ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVL VT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSG-------ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 90/150 (60.00%), Postives = 103/150 (68.67%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXR--ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR+NVFDP SLD+WDPFDGF               + + FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVL VT            +I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 89/148 (60.14%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR+NVFDP SLD+WDPFD               +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVL VT            AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD--NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.064e-44
Identity = 88/148 (59.46%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR+NVFDP SLD+WDPFD               +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVL VT            AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD--NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of DR406034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP12_DAUCA1.986e-4658.4918.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP15_SOYBN9.857e-4659.4917.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ1.287e-4560.5117.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_SOLPE2.196e-4561.4917.6 kDa class I heat shock protein OS=Solanum per... [more]
HS181_ORYSJ6.389e-4558.6018.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_HELAN1.859e-4461.8717.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP11_SOLPE2.428e-4460.2517.7 kDa class I heat shock protein OS=Solanum per... [more]
HS174_ORYSJ3.171e-4460.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ3.171e-4460.1416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ7.064e-4459.4616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248I09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248I09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406034 ID=DR406034; Name=DR406034; organism=Citrus sinensis; type=EST; length=678bp
GGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCATT
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCTGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGG
AACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCGCAGTCACCGTTCCT
AAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGCTA
AGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATAAA
TTTGGTACGAAAGCAAAGCCCTTGTGTGTTCGTATGTGTGTGTGTGTTTG
TTTTCTTCCCTTCCCCCTGTTTAATTTG
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