DR406034

Overview
NameDR406034
Unique NameDR406034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406034_ssr635 microsatellite DR406034_ssr635:635..646. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:428..1105. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 89/148 (60.14%), Postives = 106/148 (71.62%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR+NVFDP + D WDPFDG             R+T+ FANAR+DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVL VT            AIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVPATSD--RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 94/161 (58.39%), Postives = 112/161 (69.57%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTN-VFDPVSLDVWDPFD--GFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            MSLIP IFG RR++ +FDP S+DV+DPF   GF             E+S FAN RIDWKETP+ HVFK DLPGL+           R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVL VT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSG-------ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.740e-42
Identity = 89/155 (57.42%), Postives = 101/155 (65.16%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXR-------ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR N FDP SLD+WDP DGF                    + + FA ARIDWKETP+ HVFKAD+PGL+          G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVL VT            +I+ISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.063e-42
Identity = 87/144 (60.42%), Postives = 107/144 (74.31%), Query Frame = 3
Query:   75 MSLIPSIF--GGRRTNVFDPVSLD-VWDPFDGFXXXXXXXXXXXXR-ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVT 494
            MSLIP+ +   GRR+N+FDP SLD +WDPF G               ET+ FANARIDWKETP+AHVFKADLPG++          G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVL VT
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 87/159 (54.72%), Postives = 105/159 (66.04%), Query Frame = 3
Query:   75 MSLIPSIFGG-RRTNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            MS+IPS F   RR+N+FDP SLDVWDPF               RE S   NAR+DW+ETP+AHVFKADLPGL+            +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVL VT            +I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 86/149 (57.72%), Postives = 104/149 (69.80%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVW-DPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RR+NVFDP + D+W DPFD F             ET+ FANAR+DWKETP+AHVFK DLPG++          G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVL VT            AIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.056e-39
Identity = 86/149 (57.72%), Postives = 104/149 (69.80%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVW-DPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEISG 548
            RRTNVFDP + D+W DPFD F             ET+ FANAR+DWKETP+AHVFKADLPG++          G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVL VT            AI+ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTFRSIVPAISGGGS-ETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.011e-39
Identity = 82/142 (57.75%), Postives = 97/142 (68.31%), Query Frame = 3
Query:  123 DPVSLDVWDPFDGFXXXXXXXXXXXX-RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVTXXXXXXXXXXXXAIEIS 545
            DP SLDVWDPF  F             +E S F + RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVL VT            +IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.600e-38
Identity = 81/142 (57.04%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   75 MSLIPSIFGGRR--TNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVT 494
            MSLIPS FG  R   ++FDP SLDVWDPF                ETS   NAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVL VT
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSG-----ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.396e-38
Identity = 82/143 (57.34%), Postives = 95/143 (66.43%), Query Frame = 3
Query:   75 MSLIPSIFGGRR---TNVFDPVSLDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVT 494
            MSLIPS FG  R    N+FDP SLDVWDPF                 +S  ANAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVL VT
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSS--------SSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DR406034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS16C_ORYSJ2.055e-4360.1416.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_SOLLC2.684e-4358.3917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS177_ORYSJ1.740e-4257.4217.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_CHERU5.063e-4260.4218.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17B_ARATH1.473e-4154.7217.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16A_WHEAT1.629e-4057.7216.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT1.056e-3957.7216.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP11_MEDSA4.011e-3957.7518.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS178_ARATH2.600e-3857.0417.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH3.396e-3857.3417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248I09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248I09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406034 ID=DR406034; Name=DR406034; organism=Citrus sinensis; type=EST; length=678bp
GGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCATT
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCTGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGG
AACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCGCAGTCACCGTTCCT
AAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGCTA
AGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATAAA
TTTGGTACGAAAGCAAAGCCCTTGTGTGTTCGTATGTGTGTGTGTGTTTG
TTTTCTTCCCTTCCCCCTGTTTAATTTG
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