DR406034

Overview
NameDR406034
Unique NameDR406034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406034_ssr635 microsatellite DR406034_ssr635:635..646. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:428..1105. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  201 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVT 494
            R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   38 RDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  219 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLAVT 494
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVL VT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  201 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVT 494
            R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   37 RDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  210 SQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAV 491
            S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVL V
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of DR406034 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 41/134 (30.60%), Postives = 69/134 (51.49%), Query Frame = 3
Query:  105 RRTNVFDPVS----LDVWDPFDGFXXXXXXXXXXXXRETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLAVT 494
            +RT  +DP      L  WDPF+              R+         + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVL +T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE-----LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
The following BLAST results are available for this feature:
BLAST of DR406034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS177_ARATH1.876e-1237.3717.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS178_ORYSJ2.451e-1237.8417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS176_ARATH9.312e-1236.3617.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP16_ORYSJ1.216e-1139.0016.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
SP21_STIAU3.539e-1130.60Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248I09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248I09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406034 ID=DR406034; Name=DR406034; organism=Citrus sinensis; type=EST; length=678bp
GGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCATT
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCTGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGG
AACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCGCAGTCACCGTTCCT
AAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGCTA
AGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATAAA
TTTGGTACGAAAGCAAAGCCCTTGTGTGTTCGTATGTGTGTGTGTGTTTG
TTTTCTTCCCTTCCCCCTGTTTAATTTG
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