DR405942

Overview
NameDR405942
Unique NameDR405942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length311
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2589 contig Csv1_Contig2589:433..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 3
Query:  144 MADGSTVTCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 308
            MA    V C +IL+A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 3
Query:  168 CVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 308
            C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:    8 CCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 25/47 (53.19%), Postives = 39/47 (82.98%), Query Frame = 3
Query:  171 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 311
            +++L A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +T
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLT 51          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: YCU4_CAEEL (UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans GN=T23F2.4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3
Query:  162 VTCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            +TC+DI   L A++LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    3 ITCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  162 VTCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            +TC DI   + AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    3 LTCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  177 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            I+LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y I
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYII 64          
BLAST of DR405942 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.361e-11
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 3
Query:  165 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 308
            TC DI   +LA+ILPPLGVFL+ GC A+  I +LLTILGYIPGII+A+Y I
Sbjct:    4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYII 54          
The following BLAST results are available for this feature:
BLAST of DR405942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RC23_ARATH3.944e-1266.07UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
RC22_ARATH8.786e-1262.50UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
RC21_ARATH8.786e-1253.19UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
YCU4_CAEEL1.499e-1163.46UPF0057 membrane protein T23F2.4 OS=Caenorhabditis... [more]
YCU3_CAEEL1.957e-1163.46UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
PMP3_GIBZE2.556e-1170.45Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
PMP3_CRYNE4.361e-1166.67Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248E02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405942 ID=DR405942; Name=DR405942; organism=Citrus sinensis; type=EST; length=311bp
CGGCCGGGGATAAACAAAAATACCAANNNNAAATAACAAAAGCAGTTACT
CAAAACCTTAAACACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAAA
TTTTATTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCAG
ATGGAAGCACAGTAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCT
CCTCTTGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTG
TTTGCTCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTT
ATGCCATCACC
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