DR404003

Overview
NameDR404003
Unique NameDR404003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:171..592. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_NICTO (Photosystem II reaction center protein K OS=Nicotiana tomentosiformis GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.787e-23
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_NICSY (Photosystem II reaction center protein K OS=Nicotiana sylvestris GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.787e-23
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_CALFG (Photosystem II reaction center protein K OS=Calycanthus floridus var. glaucus GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.946e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL  ICLNSAL+SSSF FAKLPEAYAF NPIVDVMPVIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_NYMAL (Photosystem II reaction center protein K OS=Nymphaea alba GN=psbK PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.436e-23
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NIFSL+ ICLNSAL  S F FAKLPEAYAFLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNIFSLICICLNSALQPSGFFFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SINAL (Photosystem II reaction center protein K OS=Sinapis alba GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.102e-22
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIF+L+ IC NSAL+SS+FL AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_LACSA (Photosystem II reaction center protein K OS=Lactuca sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.102e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_HELAN (Photosystem II reaction center protein K OS=Helianthus annuus GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.102e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_CUCSA (Photosystem II reaction center protein K OS=Cucumis sativus GN=psbK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.439e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNI S + ICLNS LYSSSF  AKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_SPIOL (Photosystem II reaction center protein K OS=Spinacia oleracea GN=psbK PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.455e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLNIFSL  ICLNSALYSSSF F KLPEAYAFL+PIVD MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYSSSFFFGKLPEAYAFLSPIVDFMPVIPLFFFLLAFVWQAAVSFR 59          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PELHO (Photosystem II reaction center protein K OS=Pelargonium hortorum GN=psbK PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.455e-22
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M+NIFS + I L+SALYSSSF F KLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MINIFSFICIYLHSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_NICTO3.787e-2383.61Photosystem II reaction center protein K OS=Nicoti... [more]
PSBK_NICSY3.787e-2383.61Photosystem II reaction center protein K OS=Nicoti... [more]
PSBK_CALFG4.946e-2390.16Photosystem II reaction center protein K OS=Calyca... [more]
PSBK_NYMAL8.436e-2386.89Photosystem II reaction center protein K OS=Nympha... [more]
PSBK_SINAL1.102e-2283.61Photosystem II reaction center protein K OS=Sinapi... [more]
PSBK_LACSA1.102e-2288.52Photosystem II reaction center protein K OS=Lactuc... [more]
PSBK_HELAN1.102e-2288.52Photosystem II reaction center protein K OS=Helian... [more]
PSBK_CUCSA1.439e-2285.25Photosystem II reaction center protein K OS=Cucumi... [more]
PSBK_SPIOL2.455e-2286.89Photosystem II reaction center protein K OS=Spinac... [more]
PSBK_PELHO2.455e-2283.61Photosystem II reaction center protein K OS=Pelarg... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA
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