DR404003

Overview
NameDR404003
Unique NameDR404003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:171..592. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_WELMI (Photosystem II reaction center protein K OS=Welwitschia mirabilis GN=psbK PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.213e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 2
Query:  200 LMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            L ++  N+ +  S+F+  KLPEAYA  +PIVDVMPVIPV FFLLAFVWQAAVSFR
Sbjct:    2 LNFLLQNTFVLWSNFILCKLPEAYAVFDPIVDVMPVIPVFFFLLAFVWQAAVSFR 56          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PINKO (Photosystem II reaction center protein K OS=Pinus koraiensis GN=psbK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 2
Query:  209 ICLNSA-LYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ICL+ A ++S++  F KLPEAYA  +PIVDVMP+IPVL FLLAFVWQAAVSFR
Sbjct:    7 ICLDDAFIHSNNPFFGKLPEAYAIFDPIVDVMPIIPVLSFLLAFVWQAAVSFR 59          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_MARPO (Photosystem II reaction center protein K OS=Marchantia polymorpha GN=psbK PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  209 ICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            I L +A Y +   FAKLPEAY+  +PIVDVMP+IP+ FFLLAFVWQA+VSFR
Sbjct:    4 IYLENAFYLNGITFAKLPEAYSIFDPIVDVMPIIPLFFFLLAFVWQASVSFR 55          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_CHAGL (Photosystem II reaction center protein K OS=Chaetosphaeridium globosum GN=psbK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            MLN+ S  +   +S+ +S +FL AKLPEAYA  +PIVDVMP+IPV F LLAFVWQAAVSFR
Sbjct:    1 MLNMISTFFD--SSSNFSEAFL-AKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQAAVSFR 58          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ADICA (Photosystem II reaction center protein K OS=Adiantum capillus-veneris GN=psbK PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 2
Query:  209 ICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            I L ++L+    L AKLPEAYA  +PIVDVMPVIPV F LLAFVWQAAVSFR
Sbjct:    7 IYLENSLHFGDALLAKLPEAYAIFDPIVDVMPVIPVFFLLLAFVWQAAVSFR 58          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ANTFO (Photosystem II reaction center protein K OS=Anthoceros formosae GN=psbK PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  200 LMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            + YI L +    SS +  KLPEAYA  +PIVDVMP+IP+ FFLLAFVWQA+VSFR
Sbjct:    1 MFYIHLENTFDLSSTILVKLPEAYAIFDPIVDVMPIIPLFFFLLAFVWQASVSFR 55          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PSINU (Photosystem II reaction center protein K OS=Psilotum nudum GN=psbK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  173 MFVMLNIF-SLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M V+ N++ S ++  +N         FAKLPEAYA  +PIVDVMP+IPV FFLLAFVWQAAVSFR
Sbjct:    1 MLVISNVYPSNLFTLINP-------FFAKLPEAYAIFDPIVDVMPIIPVFFFLLAFVWQAAVSFR 58          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PINTH (Photosystem II reaction center protein K OS=Pinus thunbergii GN=psbK PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  182 MLNIFSLMYICLNSA-LYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            M NIF      L+ A ++S++  F KLPEAYA  +PIVDVMP+IPVL FLLAFVWQAAVSFR
Sbjct:    1 MFNIF------LDDAFIHSNNPFFGKLPEAYAISDPIVDVMPIIPVLSFLLAFVWQAAVSFR 56          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_STIHE (Photosystem II reaction center protein K OS=Stigeoclonium helveticum GN=psbK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:  245 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            +FAKLPEAYA  +PIVDV+PVIPVLF LLAFVWQAAVSFR
Sbjct:    7 IFAKLPEAYAPFDPIVDVLPVIPVLFLLLAFVWQAAVSFR 46          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_STAPU (Photosystem II reaction center protein K OS=Staurastrum punctulatum GN=psbK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2
Query:  233 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            + + + AKLPEAYA  +PIVDVMP+IPV F LLAFVWQAAVSFR
Sbjct:   15 NGTVILAKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQAAVSFR 58          
The following BLAST results are available for this feature:
BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_WELMI3.213e-1467.27Photosystem II reaction center protein K OS=Welwit... [more]
PSBK_PINKO4.197e-1471.70Photosystem II reaction center protein K OS=Pinus ... [more]
PSBK_MARPO5.481e-1467.31Photosystem II reaction center protein K OS=Marcha... [more]
PSBK_CHAGL1.595e-1365.57Photosystem II reaction center protein K OS=Chaeto... [more]
PSBK_ADICA1.595e-1371.15Photosystem II reaction center protein K OS=Adiant... [more]
PSBK_ANTFO2.083e-1363.64Photosystem II reaction center protein K OS=Anthoc... [more]
PSBK_PSINU2.720e-1360.00Photosystem II reaction center protein K OS=Psilot... [more]
PSBK_PINTH7.915e-1364.52Photosystem II reaction center protein K OS=Pinus ... [more]
PSBK_STIHE1.763e-1285.00Photosystem II reaction center protein K OS=Stigeo... [more]
PSBK_STAPU3.928e-1272.73Photosystem II reaction center protein K OS=Staura... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA
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