DR404003

Overview
NameDR404003
Unique NameDR404003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:171..592. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_OLTVI (Photosystem II reaction center protein K OS=Oltmannsiellopsis viridis GN=psbK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 2
Query:  239 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            S L AKLPEAYA  +PIVDV+P+IPVLF LLAFVWQA+VSFR
Sbjct:    2 SLLLAKLPEAYAPFDPIVDVLPIIPVLFLLLAFVWQASVSFR 43          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_CHAVU (Photosystem II reaction center protein K OS=Chara vulgaris GN=psbK PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2
Query:  233 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            S++   AKLPEAYA  +P+VDVMPVIPV F LLAFVWQA+VSFR
Sbjct:   16 SNNIFLAKLPEAYAIFDPLVDVMPVIPVFFLLLAFVWQASVSFR 59          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ZYGCR (Photosystem II reaction center protein K OS=Zygnema circumcarinatum GN=psbK PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.751e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2
Query:  233 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            S + + AKLPEAYA  +PIVDV+PVIPV F LLAFVWQA+VSFR
Sbjct:   15 SGTVVLAKLPEAYAIFDPIVDVLPVIPVFFLLLAFVWQASVSFR 58          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_HUPLU (Photosystem II reaction center protein K OS=Huperzia lucidula GN=psbK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.751e-12
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  176 FVMLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            F + N+F L++             FAKLPEAYA  +PIV+VMP+IP+ FFLLAFVWQA+VSFR
Sbjct:    4 FYLENVFHLIF-------------FAKLPEAYAVSDPIVNVMPIIPLFFFLLAFVWQASVSFR 53          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_TRIEI (Photosystem II reaction center protein K OS=Trichodesmium erythraeum (strain IMS101) GN=psbK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2
Query:  239 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            + L AKLPEAY+  NP+VDV+PVIPV F LLAFVWQAAV FR
Sbjct:    4 AMLLAKLPEAYSVFNPLVDVLPVIPVFFLLLAFVWQAAVGFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PSEAK (Photosystem II reaction center protein K OS=Pseudendoclonium akinetum GN=psbK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 2
Query:  236 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ++ L AKLPEAYA  +PIVDV+PVIP+LF LLAFVWQA+VSFR
Sbjct:    2 TTLLLAKLPEAYAPFDPIVDVLPVIPLLFLLLAFVWQASVSFR 44          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PORYE (Photosystem II reaction center protein K OS=Porphyra yezoensis GN=psbK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  215 LNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            +NSAL+      AKLPEAYA   PI+D++PVIPV F LLAFVWQAA+ FR
Sbjct:    1 MNSALF-----LAKLPEAYAIFKPIIDILPVIPVFFLLLAFVWQAAIGFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_PORPU (Photosystem II reaction center protein K OS=Porphyra purpurea GN=psbK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  215 LNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            +NSAL+      AKLPEAYA   PIVD++PVIPV F LLAFVWQAA+ FR
Sbjct:    1 MNSALF-----LAKLPEAYAVFKPIVDILPVIPVFFLLLAFVWQAAIGFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_OSTTA (Photosystem II reaction center protein K OS=Ostreococcus tauri GN=psbK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2
Query:  242 FLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            FL  +LPEAYA  +PIVDV+P+IPVLF LLAFVWQA+VSFR
Sbjct:    5 FLIGRLPEAYAPFDPIVDVLPIIPVLFLLLAFVWQASVSFR 45          
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_MESVI (Photosystem II reaction center protein K OS=Mesostigma viride GN=psbK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 2
Query:  245 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            + AKLPEAYA  +P+VDV+PVIP+LF LLAFVWQA+VSFR
Sbjct:    8 ILAKLPEAYAMFDPLVDVLPVIPLLFLLLAFVWQASVSFR 47          
The following BLAST results are available for this feature:
BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_OLTVI5.130e-1278.57Photosystem II reaction center protein K OS=Oltman... [more]
PSBK_CHAVU5.130e-1272.73Photosystem II reaction center protein K OS=Chara ... [more]
PSBK_ZYGCR8.751e-1272.73Photosystem II reaction center protein K OS=Zygnem... [more]
PSBK_HUPLU8.751e-1255.56Photosystem II reaction center protein K OS=Huperz... [more]
PSBK_TRIEI1.493e-1173.81Photosystem II reaction center protein K OS=Tricho... [more]
PSBK_PSEAK1.493e-1174.42Photosystem II reaction center protein K OS=Pseude... [more]
PSBK_PORYE1.949e-1164.00Photosystem II reaction center protein K OS=Porphy... [more]
PSBK_PORPU1.949e-1166.00Photosystem II reaction center protein K OS=Porphy... [more]
PSBK_OSTTA1.949e-1175.61Photosystem II reaction center protein K OS=Ostreo... [more]
PSBK_MESVI2.546e-1175.00Photosystem II reaction center protein K OS=Mesost... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA
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