DR404003

Overview
NameDR404003
Unique NameDR404003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:171..592. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ANAVT (Photosystem II reaction center protein K OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 2 
Query:  236 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ++ L AKLPEAY   +P+VDV+P+IPV F LLAFVWQAAV FR
Sbjct:    3 AALLLAKLPEAYQIFDPLVDVLPIIPVFFLLLAFVWQAAVGFR 45
[Close]
BLAST of DR404003 vs. ExPASy Swiss-Prot
Match: PSBK_ANASP (Photosystem II reaction center protein K OS=Anabaena sp. (strain PCC 7120) GN=psbK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 2 
Query:  236 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 364
            ++ L AKLPEAY   +P+VDV+P+IPV F LLAFVWQAAV FR
Sbjct:    3 AALLLAKLPEAYQIFDPLVDVLPIIPVFFLLLAFVWQAAVGFR 45
The following BLAST results are available for this feature:
BLAST of DR404003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_ANAVT7.408e-1167.44Photosystem II reaction center protein K OS=Anabae... [more]
PSBK_ANASP7.408e-1167.44Photosystem II reaction center protein K OS=Anabae... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P14 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404003 ID=DR404003; Name=DR404003; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTT
GTTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCT
TTTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAA
TAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTT
TAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTC
GCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTAT
GCCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTG
CTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGAT
TTATTCTAGTTCGAAAAAAAAA
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