DR403993

Overview
NameDR403993
Unique NameDR403993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:308..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.796e-52
Identity = 99/190 (52.11%), Postives = 115/190 (60.53%), Query Frame = 2
Query:    5 YRNDELCPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGG 574
            YRND  CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT  ET G WP A G +Y WGYC +                              NYNY  C             P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECGQGG
Sbjct:  100 YRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLL--QEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGG 257          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.159e-51
Identity = 105/195 (53.85%), Postives = 125/195 (64.10%), Query Frame = 2
Query:    8 RNDELCPAKGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEV----SPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGN 577
            R++  CPA+GFYTYDAFI AA +FP FG SG    + +RE+AAFF QT  ETTGG   +   ++ WGYCF  E+    SPP             YYGRGPIQL+   NY               NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG G N
Sbjct:   48 RDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNALGLDLV--GNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQN 226          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.490e-48
Identity = 93/180 (51.67%), Postives = 116/180 (64.44%), Query Frame = 2
Query:   32 KGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQG 571
            +GFYTYDAFI AA++FP F  +G+  +RKRE+AAF AQT  ETTGGWP AP G Y        E+   SDY           +GRGPIQ+S+NYNY               NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG+G
Sbjct:   17 RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSDY-----------FGRGPIQISYNYNYGAAGKAIGVDLL--RNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKG 175          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.955e-47
Identity = 95/196 (48.47%), Postives = 126/196 (64.29%), Query Frame = 2
Query:    5 YRNDELCPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGN 577
            +R+D  CPA+GFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT   T+       GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  GGN
Sbjct:  112 HRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCA-GGN 297          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.955e-47
Identity = 95/196 (48.47%), Postives = 126/196 (64.29%), Query Frame = 2
Query:    5 YRNDELCPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGN 577
            +R+D  CPA+GFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT   T+       GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  GGN
Sbjct:  112 HRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCA-GGN 297          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.579e-32
Identity = 73/179 (40.78%), Postives = 107/179 (59.78%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVS-PPSDYC-DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIIN 547
            CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF A   + T+G   D     +AWG C I+  +   +D+C   ++PC    KY  RGPIQL+ N+NY               NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+
Sbjct:  149 CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIIS 318          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.436e-27
Identity = 69/185 (37.30%), Postives = 92/185 (49.73%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            C  K FYT  AF+ A  A+PGF + G E   KREIAAFFA    ET               +C+ISE++  + YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALEC 248          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 9.882e-27
Identity = 71/180 (39.44%), Postives = 95/180 (52.78%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            CP K FYT   F+EA  A+PGFG    +  RKREIAA+FA    ET           +A  YC  S+  P    C+PN     +Y+GRGP+QLSWNYNY+             N+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC
Sbjct:   66 CPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPN----KEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQEC 218          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.291e-26
Identity = 68/186 (36.56%), Postives = 92/186 (49.46%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP---NYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 565
            C  K FYT  AF+ A + +PGF + G++   KREIAAFFA    ET               +C+ISE++  + YCDP    +PC    KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG
Sbjct:   89 CEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG 238          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.686e-26
Identity = 71/189 (37.57%), Postives = 96/189 (50.79%), Query Frame = 2
Query:   14 DELCPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD---PNYPC-RGK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            D+ C AKGFYT DAF+ AA  +P FG +G+    KREIAAFFA    ET               +C+I E+  PS +YCD     +PC  GK YYGRGP+Q+SWN+NY               +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC
Sbjct:   85 DDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALEC 239          
The following BLAST results are available for this feature:
BLAST of DR403993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_POPTR6.796e-5252.11Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI8_ORYSJ1.159e-5153.85Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_AVESA3.490e-4851.67Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ2.955e-4748.47Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.955e-4748.47Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
AGI_URTDI4.579e-3240.78Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIA_MAIZE4.436e-2737.30Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA9.882e-2739.44Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIB_MAIZE1.291e-2636.56Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ1.686e-2637.57Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403993 ID=DR403993; Name=DR403993; organism=Citrus sinensis; type=EST; length=582bp
GGGGTATAGAAATGATGAACTATGCCCTGCCAAAGGCTTCTACACTTATG
ATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGA
AATGAAACCATGCGTAAAAGAGAAATCGCTGCCTTTTTTGCCCAAACTGG
CCGTGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTT
GGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGAT
CCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACT
CTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAG
AGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCA
TTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATC
GTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAA
ACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGT
GGAATTGAATGTGGCCAAGGTGGGAATGCCGC
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