DR403993

Overview
NameDR403993
Unique NameDR403993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:308..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.904e-26
Identity = 70/186 (37.63%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            C  K FYT  +F+ AA ++ GF         KREIAAFFA    ET                C+I+E++  S DYCD N   +PC+   KYYGRGP+Q+SWNYNY               +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC
Sbjct:  107 CAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALEC 256          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.082e-25
Identity = 74/188 (39.36%), Postives = 87/188 (46.28%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPP--SDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            CP K FYT  AF+ A    P FGN G+    KREIAAFFA    ETT               C I E        YCD +    YPC    KYYGRGP+QLSWNYNY               NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC
Sbjct:  107 CPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALEC 256          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 67/186 (36.02%), Postives = 92/186 (49.46%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            C  K FYT  +F+ AA+++ GF N       KREIAAFFA    ET                C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALEC 253          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.023e-23
Identity = 72/192 (37.50%), Postives = 98/192 (51.04%), Query Frame = 2
Query:   23 CPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNA 580
            C  K FYT D+FI AA  FP F NS    + +REIA  FA    ET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC  GGN+
Sbjct:   92 CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMEC-NGGNS 241          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.928e-22
Identity = 68/190 (35.79%), Postives = 89/190 (46.84%), Query Frame = 2
Query:   14 DELCPAKGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGRETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            D  C  K FYT DAF+ A  ++  FG  G+E   KREIAA FA    ET               +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC
Sbjct:   85 DSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALEC 238          
BLAST of DR403993 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  425 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 562
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DR403993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI5_ORYSJ4.904e-2637.63Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU7.082e-2539.36Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ORYSJ9.249e-2536.02Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA1.023e-2337.50Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_PHAVU1.928e-2235.79Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY1.173e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246P02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246P02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403993 ID=DR403993; Name=DR403993; organism=Citrus sinensis; type=EST; length=582bp
GGGGTATAGAAATGATGAACTATGCCCTGCCAAAGGCTTCTACACTTATG
ATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGA
AATGAAACCATGCGTAAAAGAGAAATCGCTGCCTTTTTTGCCCAAACTGG
CCGTGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTT
GGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGAT
CCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACT
CTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAG
AGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCA
TTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATC
GTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAA
ACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGT
GGAATTGAATGTGGCCAAGGTGGGAATGCCGC
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