DR403988

Overview
NameDR403988
Unique NameDR403988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:147..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_MYCUA (S-adenosylmethionine synthetase OS=Mycobacterium ulcerans (strain Agy99) GN=metK PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.504e-49
Identity = 111/207 (53.62%), Postives = 129/207 (62.32%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI-------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 705
            LFTSESV EGHPDK+CD +SD+VLDA L  DP S+VA ET   T  V V GE+TT AK    D   IVR+    IG+ S D G D   C V + I  QSPDIAQGV      R E         GAGDQG MFGYA ++T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVT+ Y +     VPVR+ TV+ISTQH + +
Sbjct:    7 LFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNIVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHEARVEGAADPLDAQGAGDQGLMFGYAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYED----RVPVRLDTVVISTQHADDI 209          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_MYCMM (S-adenosylmethionine synthetase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=metK PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.504e-49
Identity = 111/207 (53.62%), Postives = 129/207 (62.32%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI-------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 705
            LFTSESV EGHPDK+CD +SD+VLDA L  DP S+VA ET   T  V V GE+TT AK    D   IVR+    IG+ S D G D   C V + I  QSPDIAQGV      R E         GAGDQG MFGYA ++T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVT+ Y +     VPVR+ TV+ISTQH + +
Sbjct:    7 LFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNIVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHEARVEGAADPLDAQGAGDQGLMFGYAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYED----RVPVRLDTVVISTQHADDI 209          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_FRASN (S-adenosylmethionine synthetase OS=Frankia sp. (strain EAN1pec) GN=metK PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.504e-49
Identity = 109/216 (50.46%), Postives = 134/216 (62.04%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAA 726
            M T LFTSESV EGHPDK+ DQ+SD++LDA L+ DP+S+VA ET   T  V V GE+TTK  VD   +VR+    IG+ S   G D   C V V+I  QSPDIAQGV      R E          GAGDQG MFG+A DET E MPL   LA +L  RL+ VRK+    +LRPDGKTQVT+EY +      PVR+ TV++S+QH   +  D + A
Sbjct:    1 MATRLFTSESVTEGHPDKIADQVSDSILDAMLKDDPKSRVAVETMITTGQVHVAGEVTTKTYVDIASVVRERILEIGYDSSKKGFDGASCGVSVSIGSQSPDIAQGVDTAHEARVEGSTEDDLDRQGAGDQGLMFGFACDETPELMPLPIALAHRLARRLSAVRKDGQVGYLRPDGKTQVTIEYEDGK----PVRLDTVVVSSQHAADIDLDTLLA 212          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_STRMK (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=metK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 106/199 (53.27%), Postives = 134/199 (67.34%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVR--KNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH 693
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QD  ++VACET  KT + +V GEITT A +D E + R     IG+ S DVG D   C VL  I +QSP IAQGV     K+PE++GAGDQG MFGYAT+ET  +MP +  L+ +L  +  ++R  KNS  SWLRPD K+QVT+ Y N     V   +  V++STQH
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVD---RKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLSWLRPDAKSQVTLRYENG----VVSAIDAVVLSTQH 192          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 720
            LFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VACET  KT  V++ GEITT A +D E+IVRDT   IG+   D+G D + C V+  + +QSP+IAQGV       PE+ GAGDQG MFGYA++ET   MP     A +L  R +E+R+     WLRPD K Q+T++Y        PV +  V++STQHD +++  ++
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVILAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQGAGDQGLMFGYASNETEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQITLKYDGSK----PVAIDAVVLSTQHDPSISQADL 200          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_MYCMS (S-adenosylmethionine synthetase OS=Mycoplasma mycoides subsp. mycoides SC GN=metK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 99/211 (46.92%), Postives = 137/211 (64.93%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLK 735
            +E  LFTSESV+EGHPDK+CDQISDA+LD  L+QD  +KVACE    TN +++ G+I++ A V+YE++ RD  +  G+V D  G++A+ CK+ + IE QSPDIAQGV        + IGAGDQG MFGYAT+E+  ++PL+  +A +L    T  RK     W RPD K+QVT++Y N N      ++ T+L+S QHD      E    +K
Sbjct:    5 IEKRLFTSESVSEGHPDKICDQISDAILDEVLKQDKNAKVACEVFATTNYLLIGGQISSTAIVNYEQVARDVLKKNGYVDDAYGINANTCKIDIKIESQSPDIAQGVE----LSNDQIGAGDQGIMFGYATNESKTYLPLAITIAHELVYNATSQRKKGLFKWARPDMKSQVTIDYTNINNP----KIDTILMSIQHDPNYNETEFKKYIK 207          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 106/202 (52.48%), Postives = 136/202 (67.33%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 720
            +FTSESV+EGHPDK+ DQISDA+LDA L +DP ++VACET  KT MV+V GEITT A VD E I R+  + IG+ S D+G D   C VL  I +QS DIAQGV    TK    +GAGDQG MFGYA+ ET   MP     + +L AR  E+RKN+   WLRPDGK Q+T++Y  D G   PV + T++ STQH   +++ ++
Sbjct:    5 VFTSESVSEGHPDKIADQISDAILDAILAKDPLARVACETFVKTGMVLVGGEITTSAWVDVETITREVIKDIGYNSSDMGFDWASCSVLSAIGKQSLDIAQGVDNRETK---ILGAGDQGLMFGYASRETDVCMPAPIAYSHRLMARQAELRKNNKLPWLRPDGKCQLTLKY--DQGK--PVAIDTIVFSTQHAPEISHKDL 199          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_XANCP (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 105/208 (50.48%), Postives = 135/208 (64.90%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVR--KNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 720
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S DVG D + C VL  I +QSPDI QGV     K PE  GAGDQG MFGYAT+ET  +MP +  L+ +L  +  ++R  KNS  SWLRPD K+QVT+ Y +     V   +  V++ST HD  V   ++
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRYEDG----VATAIDAVVLSTHHDPGVKQKDL 201          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_MYCSS (S-adenosylmethionine synthetase OS=Mycobacterium sp. (strain MCS) GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 112/207 (54.11%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 705
            LFTSESV EGHPDK+CD ISD+VLD+ L QDP S+VA ET   T  V V GE+TT AK    D    VR     +G+ S D G D   C V + I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVTV+Y      + PVR+ TV++STQH E +
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDSLLAQDPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRHRILEVGYDSSDKGFDGTTCGVNIGIGAQSPDIAQGVDTAHETRVEGAGDPLDLQGAGDQGLMFGYAIKDTPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTVQY----DGVTPVRLDTVVLSTQHAEGI 208          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_MYCSK (S-adenosylmethionine synthetase OS=Mycobacterium sp. (strain KMS) GN=metK PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 112/207 (54.11%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 705
            LFTSESV EGHPDK+CD ISD+VLD+ L QDP S+VA ET   T  V V GE+TT AK    D    VR     +G+ S D G D   C V + I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +T E MPL   LA +L  RLTEVRKN    +LRPDGKTQVTV+Y      + PVR+ TV++STQH E +
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDSLLAQDPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRHRILEVGYDSSDKGFDGTTCGVNIGIGAQSPDIAQGVDTAHETRVEGAGDPLDLQGAGDQGLMFGYAIKDTPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTVQY----DGVTPVRLDTVVLSTQHAEGI 208          
The following BLAST results are available for this feature:
BLAST of DR403988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_MYCUA6.504e-4953.62S-adenosylmethionine synthetase OS=Mycobacterium u... [more]
METK_MYCMM6.504e-4953.62S-adenosylmethionine synthetase OS=Mycobacterium m... [more]
METK_FRASN6.504e-4950.46S-adenosylmethionine synthetase OS=Frankia sp. (st... [more]
METK_STRMK8.495e-4953.27S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_PSYA28.495e-4949.50S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_MYCMS8.495e-4946.92S-adenosylmethionine synthetase OS=Mycoplasma myco... [more]
METK_AMOPS8.495e-4952.48S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_XANCP1.109e-4850.48S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_MYCSS1.109e-4854.11S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_MYCSK1.109e-4854.11S-adenosylmethionine synthetase OS=Mycobacterium s... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246O17 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246O17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403988 ID=DR403988; Name=DR403988; organism=Citrus sinensis; type=EST; length=736bp
GGGGGCCCAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTA
AGTCTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATA
AGATGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCC
GACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGA
GCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACA
TGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAG
AAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGT
GGGTCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAA
GCCCGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAG
GACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGA
GACCTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTG
CTCGTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCC
GATGGGAAGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCAT
GGTCCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGA
CTGTCACAAATGATGAAATTGCTGCTGACCTTAAGG
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