DR403426

Overview
NameDR403426
Unique NameDR403426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig160 contig Csv1_Contig160:1051..1800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.176e-15
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPT-VVARPLLGTILNLARAIDFIYKEDDGYTHSYLIK--DQIASVLGDHVP 616
            +  ++KW+  G+ P+ EEYM   + S +   ++ + F  + D  + +     S N  VV++ + I RL  D+     E  RG    +++CY  +   S+EEA +  +  ++++W  IN +L    T  + R  L    NL R +  IY+  DG+      K  D I SVL + VP
Sbjct:  425 FLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKNHSVVRSCATILRLANDLATSTEEMARGDSPKSVQCYMYETRASEEEARRHMQSMISDSWDIINSDLKTAHTSSLPRGFLAAAANLNRVVQCIYRHGDGHGSPEKTKTVDYIQSVLFNPVP 599          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 53/173 (30.64%), Postives = 90/173 (52.02%), Query Frame = 2
Query:   98 AYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTV--VARPLLGTILNLARAIDFIYKEDDGYT--HSYLIKDQIASVL 601
            AY+ +A+W +  YVP+ +EY+  A  S A   V+  S L  G+  T ++   I  + + +    +  RL+ D + ++ E+ +G VASA++CY K H  +S+EEA+K     + NA  ++N E +    V    R L   +   AR +   Y + DG T  H+  IK+ + + L
Sbjct:  676 AYTKEAEWSAVRYVPSYDEYIGNASVSIALGTVVLISALFTGEILTDDILSKIGRDSRFLYLMGLTGRLVNDTKTYQAERGQGEVASAVQCYMKDHPEISEEEALKHVYTIMDNALDELNREFVNNRDVPDTCRRL---VFETARIMQLFYMDGDGLTLSHNMEIKEHVKNCL 845          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 43/157 (27.39%), Postives = 75/157 (47.77%), Query Frame = 2
Query:   89 VIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY 559
            ++  Y  +A W+  GY P++EEY+  A  S +   +I+  +  + +   +   E +     ++  +  I RL  D+   + E +RG V  AI+CY      S+ EA++  +  +  AWK++N             L+    NLARA  FIY + DG+
Sbjct:  414 LVEGYLKEAYWYYNGYKPSLEEYLNNAKISISAPTIISQLYFTLANSIDETAIESLYQYHNILYLSGTILRLADDLGTSQHELERGDVPKAIQCYMNDTNASEREAVEHVKFLIREAWKEMNTVTTASDCPFTDDLVAAAANLARAAQFIYLDGDGH 570          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 47/158 (29.75%), Postives = 79/158 (50.00%), Query Frame = 2
Query:   89 VIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFA-TKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY 559
            ++ AY  +AKW+  GY P+++EY+ IA  S A   +I+ ++    + +    V + +     ++  A +I RL  D+    FE  RG V   I+CY K+   S+EEA++  +  +  AWKD+N  +          + G   N+ R   FIY   DG+
Sbjct:  422 LVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGA-ANIGRVAQFIYLHGDGF 578          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.080e-14
Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPK-VVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEE--LMMKPTVVARPLLGTILNLARAIDFIYKEDDGYTHSYLIK--DQIASVLGDHVP 616
            Y V+AKW+  GY P++EEYM  A  S +   ++ + +    D  + +  E +S + + +V+ ++ + RL  D+     E  RG V  +++CY  + G S+E A     + +++ W D+N E       +  +R      +NLAR    +Y+  DG+      K  D++ S+L D +P
Sbjct:  417 YLVEAKWYKRGYKPSLEEYMQNAWISISAPTILIHFYCVFSDQISVQNLETLSQHRQHIVRCSATVLRLANDLGTSPTELARGDVLKSVQCYMHETGASEERARDHVHQMISDMWDDMNSETKTACNSSSRSRGFKEAAMNLARMSQCMYQYGDGHGCPEKAKTIDRVQSLLVDPIP 593          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 50/180 (27.78%), Postives = 90/180 (50.00%), Query Frame = 2
Query:   83 QKVIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSK-EEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDG-YTHSYLIKDQIASVLGDHVP 616
            ++ I +Y  +A+W + G++PT  EY+   + S     +  N  L +       + E I +  K++    +  R+  D++  E E++RG +AS+++CY K++  S  E A+   +  +  + ++ N E M + +V       T  N+ R + FIYK  DG Y     +KDQI  +L   VP
Sbjct:  400 KRYIESYLQEAEWIATGHIPTFNEYIKNGMASSGMCILNLNPLLLLDKLLPDNILEQIHSPSKILDLLELTGRIADDLKDFEDEKERGEMASSLQCYMKENPESTVENALNHIKGILNRSLEEFNWEFMKQDSVPMCCKKFT-FNIGRGLQFIYKYRDGLYISDKEVKDQIFKILVHQVP 578          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 51/176 (28.98%), Postives = 92/176 (52.27%), Query Frame = 2
Query:   89 VIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYK-EDDGY--THSYLIKDQIASVLGD 607
            ++ +Y ++AKW+  G+ P++EEYM  +  S     ++++ F  + D   +E  E +     +V+A+  I RL  DM     E +RG V  +++CY  +   S+EEA +     +   WK +N+E+M   +  ++  +    NLAR   +IY+ E DG+   HS L+   +  +L D
Sbjct:  416 LVESYLIEAKWYYMGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEDAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMM--TSSFSKYFVQVSANLARMAQWIYQHESDGFGMQHS-LVNKMLRGLLFD 588          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   89 VIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYTHS-YLIKDQIASVLGDHV 613
            ++ +Y+ +A+W +  YVPT  EY+  A  S A   V+ NS    G+     + + +    K +   S+  RL+ D + ++ E+ RG + S+++CY +++   ++EEA+      + NA K++N EL    +     +   + N AR +   Y   DG+  S   +KD ++  L D V
Sbjct:  696 LLASYTKEAEWSAAKYVPTFNEYVENAKVSIALATVVLNSIFFTGELLPDYILQQVDLRSKFLHLVSLTGRLINDTKTYQAERNRGELVSSVQCYMRENPECTEEEALSHVYGIIDNALKELNWELANPASNAPLCVRRLLFNTARVMQLFYMYRDGFGISDKEMKDHVSRTLFDPV 872          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 50/177 (28.25%), Postives = 85/177 (48.02%), Query Frame = 2
Query:   92 IGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYTHSYL-IKDQIASVLGDHVP 616
            I +Y  +A+W + GY+P+ +EY      SC +        L M       + + +    K+   A  I RL GD + ++ ++ RG  AS+I CY K + GVS+E+A+      +++  K +N EL+     V         ++ARA  + YK  DGY+ + +  K  +   L + VP
Sbjct:  451 IDSYMQEARWIATGYLPSFDEYYENGKVSCGHRISALQPILTMDIPFPDHILKEVDFPSKLNDLACAILRLRGDTRCYKADRARGEEASSISCYMKDNPGVSEEDALDHINAMISDVIKGLNWELLKPDINVPISAKKHAFDIARAFHYGYKYRDGYSVANVETKSLVTRTLLESVP 627          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 47/163 (28.83%), Postives = 77/163 (47.24%), Query Frame = 2
Query:   83 QKVIGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYTHS 568
            + +   +  +AKW S  Y+PT EEY+  A  S           L +       + + I    +  + AS I RL GD + ++ ++ RG  ASAI CY K H G  +E+A+      +++A +++N EL+   +           ++ RA   +YK  DGYT S
Sbjct:  457 EALFDTFMQEAKWISSSYLPTFEEYLKNAKVSSGSRIATLQPILTLDVPLPDYILQEIDYPSRFNELASSILRLRGDTRCYKADRARGEEASAISCYMKDHPGSIEEDALNHINAMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHVYKYRDGYTVS 619          
The following BLAST results are available for this feature:
BLAST of DR403426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TPS02_ARATH2.176e-1528.57Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
TPSD1_PINTA8.270e-1530.64Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
SSS_SALOF8.270e-1527.39(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
BPPS_SALOF8.270e-1529.75(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
CINS_ARATH1.080e-1427.681,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
TPSD4_ABIGR2.406e-1427.78Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
SCS_SALOF2.406e-1428.981,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
TPSD1_GINBI3.143e-1427.12Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
TPSD3_ABIGR1.560e-1328.25Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPSDA_ABIGR3.475e-1328.83Limonene synthase, chloroplastic OS=Abies grandis ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403426 ID=DR403426; Name=DR403426; organism=Citrus sinensis; type=EST; length=750bp
GGGGATATTAAAATTTAAAAACTTATTTCTTATTATTGTTTTTATAACGG
CTAAGGTTTAGCTGCGTTTTGCTTCTCAGAATCAAAAAGTAATTGGAGCA
TACTCTGTTCAAGCCAAATGGTTCAGTGAAGGTTACGTTCCAACAATTGA
GGAGTATATGCCTATTGCACTAACAAGTTGTGCTTACACATTCGTCATAA
CAAATTCCTTCCTTGGCATGGGTGATTTTGCAACTAAAGAGGTTTTTGAA
TGGATCTCCAATAACCCTAAGGTTGTAAAAGCAGCATCAGTTATCTGCAG
ACTCATGGGTGACATGCAAGGTCATGAGTTTGAGCAGAAGAGAGGACATG
TTGCGTCAGCTATTGAATGTTACACGAAGCAGCATGGTGTCTCTAAGGAA
GAGGCAATTAAAATGTTTGAAGAAGAAGTTGCAAATGCATGGAAAGATAT
TAACGAGGAGTTGATGATGAAGCCAACCGTCGTTGCCCGACCACTGCTCG
GGACGATTCTTAATCTTGCTCGTGCAATTGATTTTATTTACAAAGAGGAC
GACGGCTATACGCATTCTTACCTAATTAAAGATCAAATTGCTTCTGTGCT
AGGAGACCACGTTCCATTTTGACGACTAGTTCTATACTTCTATTAATAAT
ATTTTCAGTTCCTTGGTTTGTGTTTGAAGGAAATACGGTGTATCGTATTG
GTCTGTACTAATAAATATTTTATATTTTTATTGTTATTTAAAGATTTTCC
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