DR403426

Overview
NameDR403426
Unique NameDR403426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig160 contig Csv1_Contig160:1051..1800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVV-KAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY 559
            Y  +AKWF  GY PT+++Y+  A  S     +   +F  +    T E  E +        +  S++ RL  D+     E KRG V  +I+CY    G S++EA +  +  ++  WK++N+E     ++ ++  +    NL R   F+Y+  DG+
Sbjct:  442 YLEEAKWFYSGYKPTLKKYIENASLSIGGQIIFVYAFFSLTKSITNEALESLQEGHHAACRQGSLMLRLADDLGTLSDEMKRGDVPKSIQCYMHDTGASEDEAREHIKFLISEIWKEMNDEDEYN-SIFSKEFVQACKNLGRMSLFMYQHGDGH 594          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  110 QAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYT 562
            +AKW S GY+PT EEY+     S           L +       + + I    +    AS + RL GD + ++ ++ RG  ASAI CY K H G ++E+A+      +++A +++N EL+   +           ++ RA   +YK  DGYT
Sbjct:  466 EAKWISSGYLPTFEEYLKNGKVSSGSRTATLQPILTLDVPLPNYILQEIDYPSRFNDLASSLLRLRGDTRCYKADRARGEEASAISCYMKDHPGSTEEDALNHINVMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHLYKYRDGYT 617          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 54/177 (30.51%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGM-GDFATKEVFEWISNNPKVV--KAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYTHSYL-IKDQIASVLGDHVP 616
            Y  +A+W +  YVPT++EY+   +TS     ++ +  L M G   ++E  E +    + V  +  S+I RL  D + ++ E+ RG +AS+IECY K H   ++EEA+      +  A K++  E  +KP  V       +    R    I+K+ DG+  S L +KD I   L + +P
Sbjct:  641 YYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE-FLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLP 816          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 43/158 (27.22%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   92 IGAYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYT 562
            + +Y+ +AKW + GY+PT EEY+  A  S  +        L +      +V + I    +    AS   RL GD + ++ ++ RG  AS+I CY K + G+++E+A+      + +  K++N EL+   + +          + RA   +YK  DG++
Sbjct:  453 LDSYTQEAKWIASGYLPTFEEYLENAKVSSGHRAAALTPLLTLDVPLPDDVLKGIDFPSRFNDLASSFLRLRGDTRCYKADRDRGEEASSISCYMKDNPGLTEEDALNHINAMINDIIKELNWELLKPDSNIPMTARKHAYEITRAFHQLYKYRDGFS 610          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 51/173 (29.48%), Postives = 75/173 (43.35%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY-THSYLIKDQIASVLGDHV 613
            Y  + +W   GY+PT EEY+     S           L MG+    +V E +     + +  S+  RL  D + ++ E+ RG  AS I CY K + G ++E+AIK     V  A K+ + E       +       I NL   +   YK  DGY   +  IKD I  V  D +
Sbjct:  688 YVQEREWLDAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNLGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 860          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 51/173 (29.48%), Postives = 75/173 (43.35%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY-THSYLIKDQIASVLGDHV 613
            Y  + +W   GY+PT EEY+     S           L MG+    +V E +     + +  S+  RL  D + ++ E+ RG  AS I CY K + G ++E+AIK     V  A K+ + E       +       I NL   +   YK  DGY   +  IKD I  V  D +
Sbjct:  688 YVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 860          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 51/173 (29.48%), Postives = 75/173 (43.35%), Query Frame = 2
Query:  101 YSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY-THSYLIKDQIASVLGDHV 613
            Y  + +W   GY+PT EEY+     S           L MG+    +V E +     + +  S+  RL  D + ++ E+ RG  AS I CY K + G ++E+AIK     V  A K+ + E       +       I NL   +   YK  DGY   +  IKD I  V  D +
Sbjct:  688 YVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 860          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: GBIS1_ARATH ((Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  116 KWFSEGYVPTIEEYMP---IALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIY-KEDDGYTHSY-LIKDQIASVLGDHV 613
            KW     VP+ EE++    IALTS A    +  SF+GMG+ A KE +EW+           + C         + +   G  A+AI  Y KQ  V+KEEAI   +  + +  K INEEL +K T V   +L   LN  R ++ +Y K DD Y  S   +K+ I ++L D +
Sbjct:  386 KWARGIQVPSFEEHVEVGGIALTSYA---TLMYSFVGMGETAGKEAYEWVF----------LYC---------QSDMSNGFAANAINYYMKQFVVTKEEAILECQRMIVDINKTINEEL-LKTTSVPGRVLKQALNFGRLLELLYTKSDDIYNCSEGKLKEYIVTLLIDPI 533          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 43/156 (27.56%), Postives = 72/156 (46.15%), Query Frame = 2
Query:   98 AYSVQAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQH-GVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGYT 562
            +Y  +AKW S GY+P  EEY      S AY        L +  +    + + I    +    AS   RL GD + ++ ++ RG  AS I CY K + G ++E+A+      V +  K++N EL+     +         ++ RA+  +Y   DG++
Sbjct:  452 SYMEEAKWISNGYLPMFEEYHENGKVSSAYRVATLQPILTLNAWLPDYILKGIDFPSRFNDLASSFLRLRGDTRCYKADRDRGEEASCISCYMKDNPGSTEEDALNHINAMVNDIIKELNWELLRSNDNIPMLAKKHAFDITRALHHLYIYRDGFS 607          
BLAST of DR403426 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 42/150 (28.00%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  110 QAKWFSEGYVPTIEEYMPIALTSCAYTFVITNSFLGMGDFATKEVFEWISNNPKVVKAASVICRLMGDMQGHEFEQKRGHVASAIECYTKQHGVSKEEAIKMFEEEVANAWKDINEELMMKPTVVARPLLGTILNLARAIDFIYKEDDGY 559
            +AKW+  GY P  EEYM     S +   ++ + F  + D  T ++    S N  VV++++ I RL  D+     E  RG    +++C+  + G S+ E+    +  +  AW D+N E   K   + +  L    NL R    +Y+  DG+
Sbjct:  398 EAKWYKSGYKPNFEEYMQNGWISSSVPTILLHLFCLLSD-QTLDILG--SYNHSVVRSSATILRLANDLATSSEELARGDTMKSVQCHMHETGASEAESRAYIQGIIGVAWDDLNME--KKSCRLHQGFLEAAANLGRVAQCVYQYGDGH 542          
The following BLAST results are available for this feature:
BLAST of DR403426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TPS2_CANSA5.927e-1327.92(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
TPSDB_ABIGR1.011e-1229.61Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
TPSD1_ABIGR1.320e-1230.51Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
TPSD8_ABIGR1.724e-1227.22Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
TASY_TAXCH3.842e-1229.48Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TASY_TAXBR3.842e-1229.48Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
TASY_TAXBA3.842e-1229.48Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
GBIS1_ARATH1.907e-1134.50(Z)-gamma-bisabolene synthase 1 OS=Arabidopsis tha... [more]
TPSD2_ABIGR3.252e-1127.56Myrcene synthase, chloroplastic OS=Abies grandis G... [more]
OCIS_ARATH7.245e-1128.00(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403426 ID=DR403426; Name=DR403426; organism=Citrus sinensis; type=EST; length=750bp
GGGGATATTAAAATTTAAAAACTTATTTCTTATTATTGTTTTTATAACGG
CTAAGGTTTAGCTGCGTTTTGCTTCTCAGAATCAAAAAGTAATTGGAGCA
TACTCTGTTCAAGCCAAATGGTTCAGTGAAGGTTACGTTCCAACAATTGA
GGAGTATATGCCTATTGCACTAACAAGTTGTGCTTACACATTCGTCATAA
CAAATTCCTTCCTTGGCATGGGTGATTTTGCAACTAAAGAGGTTTTTGAA
TGGATCTCCAATAACCCTAAGGTTGTAAAAGCAGCATCAGTTATCTGCAG
ACTCATGGGTGACATGCAAGGTCATGAGTTTGAGCAGAAGAGAGGACATG
TTGCGTCAGCTATTGAATGTTACACGAAGCAGCATGGTGTCTCTAAGGAA
GAGGCAATTAAAATGTTTGAAGAAGAAGTTGCAAATGCATGGAAAGATAT
TAACGAGGAGTTGATGATGAAGCCAACCGTCGTTGCCCGACCACTGCTCG
GGACGATTCTTAATCTTGCTCGTGCAATTGATTTTATTTACAAAGAGGAC
GACGGCTATACGCATTCTTACCTAATTAAAGATCAAATTGCTTCTGTGCT
AGGAGACCACGTTCCATTTTGACGACTAGTTCTATACTTCTATTAATAAT
ATTTTCAGTTCCTTGGTTTGTGTTTGAAGGAAATACGGTGTATCGTATTG
GTCTGTACTAATAAATATTTTATATTTTTATTGTTATTTAAAGATTTTCC
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