DR403418

Overview
NameDR403418
Unique NameDR403418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig672 contig Csv1_Contig672:39..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   +Y   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   ++V GWD++EGG++YG  +GG +I QPFAI      Y+YG+ D A+K GMT EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.031e-36
Identity = 75/163 (46.01%), Postives = 107/163 (65.64%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTII + ++GGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +SL
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSL 179          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.031e-36
Identity = 75/163 (46.01%), Postives = 107/163 (65.64%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTII + ++GGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +SL
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSL 179          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.755e-35
Identity = 74/163 (45.40%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L + +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   ++V GWD+ EGG++YG  LGG +  QPFAI      ++YG+ D A+K GM+ EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIAL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.755e-35
Identity = 71/166 (42.77%), Postives = 108/166 (65.06%), Query Frame = 2
Query:  128 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++L
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALAL 179          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 72/163 (44.17%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 72/163 (44.17%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 72/163 (44.17%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 72/163 (44.17%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 71/166 (42.77%), Postives = 108/166 (65.06%), Query Frame = 2
Query:  128 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++L
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALAL 179          
The following BLAST results are available for this feature:
BLAST of DR403418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PSB9_RAT2.707e-3644.79Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB9_SALSA6.031e-3646.01Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY6.031e-3646.01Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB9_HUMAN1.755e-3545.40Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]
PB6LB_SALSA1.755e-3542.77Proteasome subunit beta type-6-B like protein OS=S... [more]
PSB9_MUSSI2.993e-3544.17Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB2.993e-3544.17Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSDU2.993e-3544.17Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE2.993e-3544.17Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PB6LA_SALSA2.993e-3542.77Proteasome subunit beta type-6-A like protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403418 ID=DR403418; Name=DR403418; organism=Citrus sinensis; type=EST; length=624bp
GGGGACAAGAAGCAAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAG
GGCATTTAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTG
AAGATGGAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGG
CGTCACTTACAACGGCGGCGTTGTCCTCGGCGCCGATTCTCGTACTAGCA
CCGGGGTGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACT
GATAATGTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGT
CTCCGACTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGC
AGCCTGCAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTAC
AATAACAAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAA
GTATGAAGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTG
AGCAGCCTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTT
TTTGATCAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAGCAATT
AGTGGTTAAAGCAGTTTCTCTTGC
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