DR403418

Overview
NameDR403418
Unique NameDR403418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig672 contig Csv1_Contig672:39..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.909e-35
Identity = 72/163 (44.17%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.137e-34
Identity = 71/163 (43.56%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L  ++Y   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+VR ++Y  +  L   ++V GWD+ EGG++YG  + G +I QPFAI      Y+YG+ D A+K GM+ EE  +    A++L
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT-MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIAL 181          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.473e-31
Identity = 68/168 (40.48%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  116 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            N     GTTII + Y+ GV++GADSRTS G YV++R +DK+TQ+TD +++CRSGS+AD+Q +S Y+R +L  ++        V+ AA L   + Y N + L  G+IV G+D  +  +++ + LGG++ E+ +AI      ++YG+ D  W+ GM+ EE  + V  AVS
Sbjct:    4 NEKEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENPSLL-AGLIVAGYD--DKPRVFNISLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVS 168          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.196e-21
Identity = 57/177 (32.20%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   89 KMDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            K  L+M+ F      GTTI+GV Y GGVVLGAD+R + G  VA++  +KI  + DN+Y C +G+AAD+++ +  +   L  H +  G+   V  A  +++ + +  +  +   +I+GG D   G  ++ +   G+  + P+             F+  +K  MTKEEA  LV +A+S
Sbjct:   22 KTGLRMKGFM---KTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-INGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAIS 194          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.913e-20
Identity = 57/182 (31.32%), Postives = 98/182 (53.85%), Query Frame = 2
Query:   77 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            C R  M L  +   AP  +  GTTI+G+ +  GV+LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E  +LV +A+
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAI 198          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 56/182 (30.77%), Postives = 98/182 (53.85%), Query Frame = 2
Query:   77 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            C R  M L  +   AP  +  GTTI+G+ +  GV+LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E  +LV +++
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESI 198          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 47/162 (29.01%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+QLV +A++
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIA 203          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.650e-17
Identity = 49/177 (27.68%), Postives = 93/177 (52.54%), Query Frame = 2
Query:   95 DLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            D   + F  P +   GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIA 203          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.650e-17
Identity = 49/177 (27.68%), Postives = 93/177 (52.54%), Query Frame = 2
Query:   95 DLKMEDFNAPHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            D   + F  P +   GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIA 203          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 46/162 (28.40%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA++LV +A++
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIA 203          
The following BLAST results are available for this feature:
BLAST of DR403418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PSB9_MUSPL3.909e-3544.17Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_BOVIN1.137e-3443.56Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB6_ENCCU4.473e-3140.48Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSB7_DICDI4.196e-2132.20Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7B_ARATH7.913e-2031.32Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH2.302e-1930.77Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_PIG9.674e-1829.01Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_RAT1.650e-1727.68Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE1.650e-1727.68Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_BOVIN2.155e-1728.40Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403418 ID=DR403418; Name=DR403418; organism=Citrus sinensis; type=EST; length=624bp
GGGGACAAGAAGCAAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAG
GGCATTTAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTG
AAGATGGAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGG
CGTCACTTACAACGGCGGCGTTGTCCTCGGCGCCGATTCTCGTACTAGCA
CCGGGGTGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACT
GATAATGTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGT
CTCCGACTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGC
AGCCTGCAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTAC
AATAACAAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAA
GTATGAAGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTG
AGCAGCCTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTT
TTTGATCAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAGCAATT
AGTGGTTAAAGCAGTTTCTCTTGC
back to top