DR403418

Overview
NameDR403418
Unique NameDR403418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig672 contig Csv1_Contig672:39..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 46/162 (28.40%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            GTTI GV Y  G+VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+ LV +A++
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIA 203          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 49/168 (29.17%), Postives = 84/168 (50.00%), Query Frame = 2
Query:  122 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            PH+   GTTI G+ +  GV+LGAD+R +    VA+++ +KI  +   +Y C +G AAD++  +  V   +  H +  G+   V     ++R   +  +  +   +IVGG D   G ++YGV   G+    PF              +  ++  MT E A+ L+V+AV+
Sbjct:   33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVT 199          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 46/168 (27.38%), Postives = 84/168 (50.00%), Query Frame = 2
Query:  122 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            PH+   GTTI G+ +  GV+LGAD+R +    VA++  +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  + ++   +IVGG D + G ++Y V   G+    PF              +  ++  MT E A++L+V+A++
Sbjct:   33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVD-FTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAIT 199          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.665e-15
Identity = 44/162 (27.16%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            GTTI G+ +  GV+LGAD+R +    VA+++ +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  +  +   +IVGG D   G ++Y V   G+    PF              +  ++  MT E A++L+V+A++
Sbjct:   39 GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAIT 199          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 47/162 (29.01%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVK-VAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +G+  N GV+L AD R S G +VAN+   K+  +TD + +  +GS AD Q + D ++   H ++I    P ++K +A  L  +LS          +++GG+D  +  +++ +   G I E+ +           G  +  +   MT +EA  L  +AV
Sbjct:   14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYD--DQPRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAV 173          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 45/168 (26.79%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  122 PHSM--GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            PH+   GTTI G+ +  GV+LGAD+R +    VA+++ +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  +  +   ++VGG D   G ++Y V   G+    PF              +  ++  MT E A++L+V+A++
Sbjct:   33 PHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAIT 199          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            GTT +G+    GVVL AD R S G  +  R   KI ++ +++ +  +G   D   +   +R     +  Q G+  +VK  A L+  +    K F      +VGG+D  E  K+Y V + G I E  +A       + Y   D  +K+ +T EE  +L VKA++
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYD--EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAIN 170          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 45/163 (27.61%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +G+    GVV+  + R + G ++A++A+ KI Q+ D + +  +GS  D+Q ++  ++   + + I+  +  TV+  A L   L  + + F     +++GG D  EG  IY + P+GG I E+            YG  +  +   +  +EA +L V+A+
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAI 172          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 46/165 (27.88%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  125 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            H+ GTT +   + GGV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + Y+ +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  M+ EEA +L  +++
Sbjct:   54 HAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVEEASELARRSI 217          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 46/169 (27.22%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  116 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            N  +  GTT +GV    G+VL ++ R + G ++A++ + K+ Q+ D V +  +GS  D+Q +   V      + ++  +  T+K    L+   LS N    +   +++GG DK  G  IY +  +GG+I E   +         YG  +  ++E MT +E   L ++A+
Sbjct:    3 NDKYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDK-NGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAI 170          
The following BLAST results are available for this feature:
BLAST of DR403418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PSB7_HUMAN2.815e-1728.40Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB10_HUMAN1.183e-1529.17Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]
PSB10_BOVIN1.183e-1527.38Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB10_RAT7.665e-1527.16Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSMB_SULSO1.001e-1429.01Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB10_MOUSE1.001e-1426.79Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSMB_PYRHO9.370e-1330.06Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_ARCFU9.370e-1327.61Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSB5A_ARATH9.370e-1327.88Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSMB_METTE1.224e-1227.22Proteasome subunit beta OS=Methanosarcina thermoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403418 ID=DR403418; Name=DR403418; organism=Citrus sinensis; type=EST; length=624bp
GGGGACAAGAAGCAAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAG
GGCATTTAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTG
AAGATGGAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGG
CGTCACTTACAACGGCGGCGTTGTCCTCGGCGCCGATTCTCGTACTAGCA
CCGGGGTGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACT
GATAATGTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGT
CTCCGACTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGC
AGCCTGCAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTAC
AATAACAAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAA
GTATGAAGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTG
AGCAGCCTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTT
TTTGATCAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAGCAATT
AGTGGTTAAAGCAGTTTCTCTTGC
back to top